Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3503 ATGCGAGAAGAAGATGCTTCCGCCGGTGCCGGTAATGGAAAAGAAGAATTAACGGTGGAAACCGCCGAGCCTTCCTCTGATCTCACCGTACCTCTGCTCAGGTACCAAAAGGAATGGCTAGCGTGGGGTTTGAATCAGGAAAATTCTCCTGTTAGAGGTGGAATTCTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCCCTTGTTCTTGCCAAACGTCAAGACTTGCGACAAACGGGTCGCGAAATTGAACACGAATGGGTGCCTTCAACCTCAAGTCCTTTTGTTACAGTGTTGCCTGCAATCAAAGGAACGCTTGTTGTGTGTCCCCCGGTTGCTGTCTCTCATTGGGTCAATGAAATTGATCGCTTTACTTCCGAAGGGAGCACTGAGGTGCTGGTCTATCATGGAATTGATTTAGTGAAGCCCCGGGACCAGTTCTCGAAGTTTGATTTTGTTATAACTACTTACTCTATTGTTCAGTCTGAGTGCAAGACGGCCATGAGTGAATGTCTCTATTGTGGAAAGGTGTTTTTGGAGCCTAATTCTCGTCAAGACCATGTTTGTAGGCCTGATGTTAGAGCTGAAAGACAGCCACTTCTACATGCTGTAAAGTGGCAGCGGATCGTATTGGATGAGGCGCACTATATAAAAGATATAGATGACAGCACTACTGAAGCAGTTCTTGCTTTAGAGTCTTCCTACAAATGGACATTAAGTGGCACTCCCCTTCAGAACAATGTCGGAGAGCTGTATTCTCTGGTGCGGTTCCTGCAAGTTACTCCTTATTCCTACTTATTGTGCAAGGACTGTGATTGTAAGATTCTTGAGAAGGAAAGAAATGAAAAATGTTCGAAATGCAGCCATGGTACTTCAAGGCATTTCTCTTGGTGGATTAAAAACATAGTGCTAAGGCGCACTAAAATAGGCAGGGTTGCTGATCTTGCGTTTCCACAAAAAATTATTTCATTGAGAAGAGTCTACCTGGACGTAAGGGAGCAAGACTATTACGAGTCAACATCTATTGAATGTCAGAAACGGTGTAATATATTTAATGCATGCAATTTTGCGGTGAATCATCATGCTGATAAATTTGGTCTCCTCACGGAGCTGCGTCAGGTGGATAATTCGTTAGAAGGGGGAGGTGTGGCAGAAAATGATGGTACTGTTGAACAAGTATGTGGCATTTGTGATGAGCCAGAGGAAGACCCTGTAGTTACCTCTTGTGAGCATGTATTTTGTAATGCATGCCTAGTAGACTTCTCTGCTTCCATGGATCCAGTGCTATGCCCCTCATGCTCTCAACCAATAACTGTTGAGATAACTTCCAGTAAGGATGTCAGTGGCAAGTCTAATGATACAGCCATTAAGGGTTTCAGATCATCAAGCATCTTATACAAAACTGAGCTTGAGAACTTTGAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAATTTCATGTTTCAAAGAGATGGTTCTGCCAAAGGGATTGTTTTTAGCGAATTCACATCATTCTTGGATCTTATAAATTACTCTTTGGTCAAGTCTGGAGTGTCTTGTGTTCAATTGAACGGATGCATGTCATTGACTGCTGCCATTAAAAGATTTAATGATGATCCAGACTGCAAATTTTTTCTCTTGAGTTTGAAGGCAGCTGGTGTGGCCCTCAATTTGACTGTAGCATCACATGTTTTCCTCATGGAGCCTTGGTGGAACCCAGACGCAGAGCAACAGGCTCAGGATAGAATTCACCGAATAGGGCAAAATAAACCTATAAGAGTTGTGAAGTTTATCACAGAGAACACCGTCGAGGAGAGGATTCTGGAGCTGCAGCAGAAGAAGGAAGCAGTGTCTGAAGGGCTAATAAGACGGCTCTTCTGA 1896 0.4335 MREEDASAGAGNGKEELTVETAEPSSDLTVPLLRYQKEWLAWGLNQENSPVRGGILADEMGMGKTIQAIALVLAKRQDLRQTGREIEHEWVPSTSSPFVTVLPAIKGTLVVCPPVAVSHWVNEIDRFTSEGSTEVLVYHGIDLVKPRDQFSKFDFVITTYSIVQSECKTAMSECLYCGKVFLEPNSRQDHVCRPDVRAERQPLLHAVKWQRIVLDEAHYIKDIDDSTTEAVLALESSYKWTLSGTPLQNNVGELYSLVRFLQVTPYSYLLCKDCDCKILEKERNEKCSKCSHGTSRHFSWWIKNIVLRRTKIGRVADLAFPQKIISLRRVYLDVREQDYYESTSIECQKRCNIFNACNFAVNHHADKFGLLTELRQVDNSLEGGGVAENDGTVEQVCGICDEPEEDPVVTSCEHVFCNACLVDFSASMDPVLCPSCSQPITVEITSSKDVSGKSNDTAIKGFRSSSILYKTELENFETSTKIEALREEINFMFQRDGSAKGIVFSEFTSFLDLINYSLVKSGVSCVQLNGCMSLTAAIKRFNDDPDCKFFLLSLKAAGVALNLTVASHVFLMEPWWNPDAEQQAQDRIHRIGQNKPIRVVKFITENTVEERILELQQKKEAVSEGLIRRLF* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3503 631 PANTHER BNAA08G28190D PROTEIN 18 83 - -
Lja3g3503 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 625 IPR027417 -
Lja3g3503 631 Pfam Helicase conserved C-terminal domain 484 592 IPR001650 -
Lja3g3503 631 CDD DEXDc_SHPRH-like 32 286 - -
Lja3g3503 631 PANTHER BNAA08G28190D PROTEIN 302 627 - -
Lja3g3503 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 447 IPR013083 -
Lja3g3503 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 266 IPR027417 -
Lja3g3503 631 SUPERFAMILY RING/U-box 394 441 - -
Lja3g3503 631 SMART ultradead3 28 280 IPR014001 -
Lja3g3503 631 MobiDBLite consensus disorder prediction 1 23 - -
Lja3g3503 631 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 302 627 - -
Lja3g3503 631 SMART ring_2 397 436 IPR001841 -
Lja3g3503 631 Gene3D - 5 333 IPR038718 -
Lja3g3503 631 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 45 264 IPR014001 -
Lja3g3503 631 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 631 IPR001650 -
Lja3g3503 631 Pfam Zinc finger, C3HC4 type (RING finger) 394 441 - -
Lja3g3503 631 PANTHER BNAA08G28190D PROTEIN 104 191 - -
Lja3g3503 631 PANTHER BNAA08G28190D PROTEIN 200 305 - -
Lja3g3503 631 SMART helicmild6 512 592 IPR001650 -
Lja3g3503 631 ProSiteProfiles Zinc finger RING-type profile. 397 437 IPR001841 -
Lja3g3503 631 CDD SF2_C_SNF 479 603 - -
Lja3g3503 631 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 200 305 - -
Lja3g3503 631 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 104 191 - -
Lja3g3503 631 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 18 83 - -
Lja3g3503 631 Pfam SNF2-related domain 46 379 IPR000330 GO:0005524|GO:0140658
Lja3g3503 631 ProSitePatterns Zinc finger RING-type signature. 412 421 IPR017907 -
Lja3g3503 631 Gene3D - 457 630 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3503 Lja-Chr3 69637027 69642842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3503 17 627 RAD5 or RAD16-like Gene Family AT1G05120 50.635 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja3g3503 SNF2_N 1e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3503 K15083 - gmx:100798333 754.207