Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3490 ATGTGTAATATATTCTTTACGGTGGAAAAATTGGTGGGTGGCTTGAAATTCAGGTCAAGTATGAAGCAGTTTATGGTTTTGCACCTTGTGGTTTGGATTTGGGTTATCTTCCTCTGTGGAACTGCTCACAGTAGAAGGCCTGAAAGTGTAAACGTTGGTGCGATTCTCACATTCGATTCAGTCATAGGTAGAGCTGCAAAGTTGGCCATGGAAATGGCTGTTTCTGATGTCAATTCTGACCCAAGAGTTCTCTTTGGGACCAAGCTCAACTTGATAATGAATGATACCATGTGCAATGCTTTTCTGGGTTCAGCTGGAGCTTTTCAGATACTTGAGAAAGGGGTTGTGGCCATAATTGGCCCTCAGTCATCCGCCCAAGCTCATATTATTTCTCAAATTGCTGATGCGGTGCAAGTTCCTCTTATTTCATATGCTGCCACTGATCCAACCCTATCCTCACTTCAATTTCCTCTCTTTTTCCGTACTATACAAAGTGACTCAGAGCAAATGACTGCTATGGCCGATCTAATCGAATTTAATGGATGGAAAGAGGTCAATGCTGTATTCTTGGATGATGATTACGGGAGAAATGGAGTATCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTGCTCACAAGCTACCTTTGAGTATTCATTTTGATGAGGATGAAATCACCCACTTGCTCAATCAATCGAAAATTTTCGGTACCCGTGTGTATGTTGTTCATGTCAACCCTGATCCGGGATTGAGAATTTTTTCCGTTGCTCACAAACTTCAAATGATGGCTAATGGCTATGTCTGGCTTGTCACAGATTGGCTCTCTGCTACCCTAGATTCATTATATCCTGTGAATCAGACATCTCTCAGTATTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCAGATTCCAGGAAAAAAAGAGCTTTTGTTTCTCGATGGATTAAAATGCAAAAAATAAGTGTAGCAAAAACTAGTTTGAACTCCTATGGATTTTATGCTTATGACACAGTTTGGGCAGTTGCACTTTCAATTCATAAGTTTTTGGAAGTACATAAAAATATTACCTTCTCGCTTGATGATAGCCATATGCTACCTCAGTCAGAAGGAATTGGTATTCAGCTTGAGAAGCTCAAAATCTTCAATGGTGGATTTGACCTGGTCGATATACTCTTACAATCAAATTTTACAGGTGTGGGTGGTCAACTTTGGTTTAATTCAGACAAAAATGTCAGAAGTGGTGGTTATGATGTTATCAATATCAATCAGATGGAAATAGCTAGGGTTGGTTATTGGTCTAATCATTCAGGGTTTTCAGTTGTACCCCCTAAAGTTGTTACAAAAAAAGAACATGGTAATGGTATTGGTAGGTTTTCCCAAGTTCAGAAGCTTGATAACATTACTTGGCCGGGTGGGGAGACAGAAAGACCCCGTGGCTGGGTGATTGCTGATAATACAAAGCCACTGAAAATTGCAGTGCCAAGGAGAGCAAGTTTTGTCGAATTTGTAACTGAAATGCAAGATAGTCATCAAATTCAGGGGTACTGCATTGATATCTTCAACAAATCCCTTGAATTTATTCCATATCAAGTTCCTTTCGTATTCCAGCCTGTTGGGAACGGCAAAGAAAATCCCAATTATGATGCACTCGTGAAAATGGTCAATGACAATGTATATGATGCAGTTGTTGGAGACATTGCAATCGTGACAAACCGTACAAAGATTGTGGATTTTTCTCAGCCCTTTGCATCATCTAGCCTTGTTATTGTGGCTCCTATCAACACTGTAAGATCAAATGCTTGGGTGTTCCTCAAACCATTTACAGCAGCCATGTGGTGTGTCATTGCTGCATCATTTATGATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAATCAATGATGACTTCCGTGGTCCTCCTCAGAGGCAAATTGTGACAATGTTTATGTTCAGCCTCTCAACACTGTTTAAGAGAAGTAATGAAAACACCATGAGTTCACTTTCCAAAATGGTGATGATAGTCTGGCTTTTCCTATTGATGGTGATCACGGCTAGCTATACAGCAAACCTGACTTCGATTCTTACCGTGGAGAAGCTTTCATCGCCCATCACAGGAATTGATAGCTTGATTGCAAGTAACTGGCCTATTGGATACCAAGTAGGGTCATTTGCTTACAGCTATCTGACAGATAACCTTTATGTACCAAGTTACAGACTTGTTTCCTTAGGCTCCCCTGAGGAGTATGCTACAGCGCTGCGTAAAGGGACATCTGGTGGCGGGGTGGCGGCTATCATTGATGAGCTTCCATATGTTGAATTATTTCTGTCAAAAGAAACTGATTTCGGTATTATTGGACAGCCGTTTGCCAGAAGCAGTTGGGGATTTGCTTTTCAAAGAGAATCTCCTCTTGCCCTTGACATGTCCACAGCAATTTTGAAACTCACGGAGAATGGAGAGCTGCGAAAGATACATGAGAAGTGGTTCTGTAAGATGGGTTGCCCTGAAGAAAGGAAAAGCAACCCTAAGGTTGAACAACTTTACTTGACTAGCTTCTGGGGTCTGTATCTTTCATGCGCTGTCGTCTCTCTTGCTGCACTTTTAATATTTCTGCTGCGGATGATTTGCCAATATGGTCGCTTCAAACAAAAACAAAAGGATATTATCGTTTCTTCATCTTCTGAACCATCAAGCAGTCATTGTTCCCAGGTTGTTGGTAACTTCTTTAACTTCATTGACAAGAAGGAAGAGGCCATAAAGAAAATGTTCGCTCAATGTGACAATAGTCACAGCCCCAATTGTTGGCAGTTTGCTTCATGCGCCAGAGGTGGCTTCCAATATCTAATTGTTTCCAATATATTTCAGGTGTTGTTCTTCATGGTTTTCTGCTTGTGGATTCCCATGGATGTGATGGGAATGACAGGAACTAGTGCTGTAAACTCTAGTGTTTCTTCCAACCCAAGTGTTTTGAGGATTGGAGCCTTGTTCACTCTTGATTCTGTCATTGGAAGGTCTGCTAAACCTGGAATCTTGGCTGCAATTGAAGATGTTAATGCTGATAAAATCATTCTTCCTGGCATTAAGCTGGAGGTCCTTTTACATGATACAAATTGCAGTGGGTTTCTTGGAACAGTAGAAGCTTTGCAGTTAATGGAGCATGAAGTAGTTGCTGTAATTGGTCCACAGTCCTCTGGAATAGCCCATATCATCTCTCACGTTGCTAATGAACTCCATGTACCTCTTCTTTCATTTGGGGCAACAGATCCCTCTCTATCTTCTCTGCAGTACCCGTATTTTATCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAGTTGCAGACTTGGTTGATCACTATAGATGGAGGGAGGTGATTGCCATTTTTGTAGATGATGATAATGGAAGGAACGGGATTTCAGCACTCGGAGATGCTCTTGCGAAGAAGCGCGGCAAGATCTCTTACAAGGCTGCCTTGCCTCCTGGAGCCTCCAAGAGTTATATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCCCGGGTCTATGTTCTCCATGTTAATCCTGATTCTGGTTTGCAAATTTTTTCTATTGCCAAGAAGCTTGGAATGATAACCAGTGGCTATGTGTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCAATGGAGCAAGTTGACACTGGCACATTAAATCTCCTTCAAGGGGTTGTAGCTTTGCGCCACCACACTCCTGATAGTGATCTCAAAAACAAATTTTTCTCCAGGTTGAAGAACCTAAAAGGCATGCAGAAGTCAAGCTTCAACTCTTATGCATTGTATGCATATGATTCTGTTTGGTTAGCAGCCCGTCCATTGTTTTTTCCCACAATCTTGGGAATGAACTTCACTGGTTTGAGTGGTCCAATTCAAATTGGTTATTGGTCTAATTACTCTGGTCTATCAGTCATAGCACCGGAAGTGTTATATAAGAAGCCAGCCAACACTTCAACAAGCAATGAGAAACTGGACAGTGTTCTGTGGCCTGGAGAAACTATAGCTACACCAAAAGGGTGGATTGTATCTAAAGACAAGAACCCTCCTGGGGTAAAAGGCTTTTGCATTGATGTCTTTGAAGCAGCCATAAATTTGCTGCCTTATCCTGTCCCAAGACAATATATATTATTTGGAAATGGTGATAGAAATCCCAGCTATAGTGACCTTGCCAATCAGGTTGCATCAAATAACTATGATGCAGCTGTTGGAGATATTACAATTGTCCCAAACAGGACAAGGATTTTGGATTTCACTCAACCTTTCATGGAATCAGGGCTGGTTGTTGTTGTTCCTGTCAAGGAGGTCAAATCAAGCCCTTGGTCTTTCCTTAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTCTTTTTGTGGGAGCTGTTGTATGGGTTCTTGAGCACCGGCACAATCCAGAGTTCCGTGGTCCACCCAAGAAACAAATTATGACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCTCACACAGAGAAAACACTGTGAGTGGTCTTGGGCGATTCGTGCTGATCATATGGCTTTTCGTCGTGCTTATTATCAATTCAAGCTACACAGCAAGCTTAACATCCATACTCACAGTGCAGCAACTGTCTTCACAAATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAGCCAATTGGAGTTCAAGATGGGTCCTTTGCTCGGAAGTACCTGATAGATGAACTCAATATACAAGAATCTAGGATAGTTTCGTTGAGAGATCAGTCGGCATATGCTGATGCCCTTATGCGTGGACCGAAAGGGGGAGGGGTTGTAGCCATTGTTGATGAGCTTCCTTATATTCAGCTCTTCATGTCCAATACCAACTGTAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATATGTAAGGACTCTCCCCTTGCTGTTGATATGTCAACCGCCATTCTTCAACTCTCCGAGAATGGTGACCTGCAAAAGATCCATGACAAATGTGTTCTGTCAATACATGAAATTTATCCCAGAGCCTGAGGTAGCTGACGAGGAAGTTCAATCAAGCAGGTCTAGACGGTTTATGAAAATCGGATCTGCTAGCTTCAAGGACTTGATTGATTTCGTGGATAAGAGAGAAAAAGAAATCAAAGAGGTACTTAGGCAGAAGAGTAACAAGAGGAGACGCAGCCAGAGCATAGATGGTCAATCAAGTTCACCTGCCTAA 5271 0.4187 MCNIFFTVEKLVGGLKFRSSMKQFMVLHLVVWIWVIFLCGTAHSRRPESVNVGAILTFDSVIGRAAKLAMEMAVSDVNSDPRVLFGTKLNLIMNDTMCNAFLGSAGAFQILEKGVVAIIGPQSSAQAHIISQIADAVQVPLISYAATDPTLSSLQFPLFFRTIQSDSEQMTAMADLIEFNGWKEVNAVFLDDDYGRNGVSALSDELEKRRLKIAHKLPLSIHFDEDEITHLLNQSKIFGTRVYVVHVNPDPGLRIFSVAHKLQMMANGYVWLVTDWLSATLDSLYPVNQTSLSILQGVVGLRQHIPDSRKKRAFVSRWIKMQKISVAKTSLNSYGFYAYDTVWAVALSIHKFLEVHKNITFSLDDSHMLPQSEGIGIQLEKLKIFNGGFDLVDILLQSNFTGVGGQLWFNSDKNVRSGGYDVININQMEIARVGYWSNHSGFSVVPPKVVTKKEHGNGIGRFSQVQKLDNITWPGGETERPRGWVIADNTKPLKIAVPRRASFVEFVTEMQDSHQIQGYCIDIFNKSLEFIPYQVPFVFQPVGNGKENPNYDALVKMVNDNVYDAVVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINTVRSNAWVFLKPFTAAMWCVIAASFMMIGVVIWILEHRINDDFRGPPQRQIVTMFMFSLSTLFKRSNENTMSSLSKMVMIVWLFLLMVITASYTANLTSILTVEKLSSPITGIDSLIASNWPIGYQVGSFAYSYLTDNLYVPSYRLVSLGSPEEYATALRKGTSGGGVAAIIDELPYVELFLSKETDFGIIGQPFARSSWGFAFQRESPLALDMSTAILKLTENGELRKIHEKWFCKMGCPEERKSNPKVEQLYLTSFWGLYLSCAVVSLAALLIFLLRMICQYGRFKQKQKDIIVSSSSEPSSSHCSQVVGNFFNFIDKKEEAIKKMFAQCDNSHSPNCWQFASCARGGFQYLIVSNIFQVLFFMVFCLWIPMDVMGMTGTSAVNSSVSSNPSVLRIGALFTLDSVIGRSAKPGILAAIEDVNADKIILPGIKLEVLLHDTNCSGFLGTVEALQLMEHEVVAVIGPQSSGIAHIISHVANELHVPLLSFGATDPSLSSLQYPYFIRTTHSDYFQMYAVADLVDHYRWREVIAIFVDDDNGRNGISALGDALAKKRGKISYKAALPPGASKSYISDLLNGVNLMESRVYVLHVNPDSGLQIFSIAKKLGMITSGYVWIATDWLPSVLDSMEQVDTGTLNLLQGVVALRHHTPDSDLKNKFFSRLKNLKGMQKSSFNSYALYAYDSVWLAARPLFFPTILGMNFTGLSGPIQIGYWSNYSGLSVIAPEVLYKKPANTSTSNEKLDSVLWPGETIATPKGWIVSKDKNPPGVKGFCIDVFEAAINLLPYPVPRQYILFGNGDRNPSYSDLANQVASNNYDAAVGDITIVPNRTRILDFTQPFMESGLVVVVPVKEVKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWVLEHRHNPEFRGPPKKQIMTIFWFTFSTMFFSHRENTVSGLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISGTQPIGVQDGSFARKYLIDELNIQESRIVSLRDQSAYADALMRGPKGGGVVAIVDELPYIQLFMSNTNCKFRTVGQEFTKSGWGYVRTLPLLLICQPPFFNSPRMVTCKRSMTNVFCQYMKFIPEPEVADEEVQSSRSRRFMKIGSASFKDLIDFVDKREKEIKEVLRQKSNKRRRSQSIDGQSSSPA* 1757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3490 1756 Gene3D - 781 840 - -
Lja3g3490 1756 CDD GluR_Plant 491 833 - -
Lja3g3490 1756 SUPERFAMILY Periplasmic binding protein-like I 45 475 IPR028082 -
Lja3g3490 1756 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 936 - -
Lja3g3490 1756 Pfam Ligand-gated ion channel 1465 1634 IPR001320 GO:0015276|GO:0016020
Lja3g3490 1756 Gene3D - 1350 1455 - -
Lja3g3490 1756 Coils Coil 1724 1744 - -
Lja3g3490 1756 SMART GluR_14 1350 1669 IPR001320 GO:0015276|GO:0016020
Lja3g3490 1756 SMART GluR_14 494 835 IPR001320 GO:0015276|GO:0016020
Lja3g3490 1756 Gene3D - 68 418 - -
Lja3g3490 1756 Gene3D - 995 1119 - -
Lja3g3490 1756 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 983 1289 - -
Lja3g3490 1756 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1309 1654 - -
Lja3g3490 1756 MobiDBLite consensus disorder prediction 1734 1756 - -
Lja3g3490 1756 Pfam Ligand-gated ion channel 834 865 IPR001320 GO:0015276|GO:0016020
Lja3g3490 1756 Gene3D - 1456 1580 - -
Lja3g3490 1756 Gene3D - 605 730 - -
Lja3g3490 1756 Pfam Receptor family ligand binding region 67 426 IPR001828 -
Lja3g3490 1756 Pfam Receptor family ligand binding region 1012 1288 IPR001828 -
Lja3g3490 1756 SUPERFAMILY Periplasmic binding protein-like II 1364 1654 - -
Lja3g3490 1756 CDD PBP1_GABAb_receptor_plant 51 446 IPR044440 -
Lja3g3490 1756 PANTHER GLUTAMATE RECEPTOR 3.7 32 936 - -
Lja3g3490 1756 Pfam Bacterial extracellular solute-binding proteins, family 3 1400 1647 IPR001638 -
Lja3g3490 1756 Pfam Bacterial extracellular solute-binding proteins, family 3 510 833 IPR001638 -
Lja3g3490 1756 CDD PBP1_GABAb_receptor_plant 995 1321 IPR044440 -
Lja3g3490 1756 Gene3D - 165 442 - -
Lja3g3490 1756 SUPERFAMILY Periplasmic binding protein-like I 989 1357 IPR028082 -
Lja3g3490 1756 SUPERFAMILY Periplasmic binding protein-like II 472 833 - -
Lja3g3490 1756 Gene3D - 1120 1280 - -
Lja3g3490 1756 Gene3D - 490 604 - -
Lja3g3490 1756 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 123 151 - -
Lja3g3490 1756 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 63 79 - -
Lja3g3490 1756 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 338 350 - -
Lja3g3490 1756 PANTHER GLUTAMATE RECEPTOR 3.7 983 1289 - -
Lja3g3490 1756 PANTHER GLUTAMATE RECEPTOR 3.7 1309 1654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3490 Lja-Chr3 68772159 68791245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3490 35 935 Ion Channels AT2G32400 55.055 0.0 1002
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3490 K05387 - gmx:100784247 1451.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1089 3 11318995 11325000 Lja3g3490 3 68772159 68791245 PCT