Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3487 ATGCCCGCTGGTATTATGATACCTGCGATGAACATGCCCTCAATGCTTGGAAGAAACGGTGACGTTGGTGGCAGTTTTGGATTTTCTTCAAGTCTCTCTCTTTCCCAGCCGCACCTAATGGAAGCTCATCATCAGCTCCACCACCACCTTGACATGGCTCCTCAGAACACCACCTCCGAGAGCGACATCGCCGCCGCGGTGAGAATCCGTGGAGAAGACGAGTTCGACAGTGCCACCAAGTCCGGCAGCGAAAACCAAGAAGGTGGCGCCTCTGGAGGAGACCAGGACCCTCGTCCTAACAAGAAAAAGCGCTACCACCGCCACACTCAGCACCAGATCCAGGAAATGGAATCTTTTTTCAAGGAGTGCCCACACCCTGATGACAAGCAGAGGAAGGAGTTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACACAGCATGAGAGGCAAGAGAACACGCAGCTTAGGACTGACAATGACAAGCTTCGTGCGGATAACATGAGGTTGAGGGAAGCTCTTAGCAATTCTTCGTGTCCTAATTGTGGTGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCCAGGCTAAGAGAAGAGATTGATAGGATTTCAGCCATTGCTGCAAAGTATGTGGGGAAGCCGGTGGTGAGCTACCCACTCCTTTCTCCGCCATCTGCTCCTTCGCGTCCTCTAGAACTCGGAATAGGCGGCTTTGGAGGCCAACCAGGCGTTGGTGGTGACATGTATGGAGCCGGAGAGCTTCTCAGGTCAATCAGTGGACCTACTGAAGCTGACAAACCAATTATAATAGAGCTCGCTGTCGCAGCCATGGAGGAGCTCATTGGAATGGCACAAATGGGTGAGCCTCTTTGGCTGACCTCGCTGGATGGCACCACAACCGTGCTCAATGAGGATGAATACATCAGGTCCTTTCCCCGAGGAATTGGTCCTAAGCCAGATGGGTTCAAGTGTGAGGCTTCACGAGAAACTTCTGTTGTCATCATGAACCATGTTAACCTGGTTGAGATTCTGATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGTATCGTCTCAAGGGCAATGACTCTAGAAGTGCTATCAACTGGGGTAGCGGGAAACTACAATGGTGCCTTGCAAGTGATGACAGCTGAACTGCAAGTGCCTTCACCTCTTGTGCCAACTAGGGAGAGTTATTTTGTGAGGTATTGTAAGCAGCATGCTGATGGGACTTGGGCAGTGGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCTGCTAGATGTAGAAGAAGGCCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTACTCAAAGGTCACCTGGGTTGAGCATGTAGAAGTGGATGAAAGAGGTGTTCACAATCTATACAAGCAGCTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTTCAACCTTAGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACTAACATTCCCACAGTTGATGTTGGCGTGATAACAAACCAAGATGGGAGAAAGAGCATGTTGAAACTGGCTGAGAGGATGGTTATAAGCTTTTGTGCTGGAGTCAGTGCTTCCACTGCTCACACATGGACAACAATCTCCGGGACTGGAGCTGAAACTGATGATGTTCGGGTCATGACCCGAAAGAGTGTGGATGACCCAGGTAGGCCTCCGGGTATCGTCCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCTAAGAGGGTCTTTGAATTTCTCCGCGATGAGAACTCTAGAAGTGAGTGGGATATCCTTTCCAATGGTGGAGTAGTTCAAGAAATGGCACACATTGCTAACGGACGAGATACTGGAAATTGTGTCTCTCTACTTCGAGTGAATAGTGCTAATTCTAGCCAAAGTAACATGTTAATACTGCAAGAGAGTTGCACGGACTCTACGGGCTCATTCGTGATCTATGCTCCTGTGGACATTGTTGCTATGAATGTGGTTCTAAATGGAGGGGACCCGGACTATGTAGCCCTTCTACCTTCAGGGTTTGCTGTGCTCCCAGATGGGACCACAGCACATGGAGGTGGCATTGGCGAAACTGGCCATGGTGGTTCGCTTTTAACTGTTGCGTTTCAGATTTTGGTGGATTCAGTTCCGACGGCAAAGCTTTCTCTTGGATCTGTTGCGACGGTTAATAATCTCATTGCTTGCACTGTTGAGAGGATTAAGGCTGCCTTGTCTGGTGAAGTTGCATGA 2322 0.4918 MPAGIMIPAMNMPSMLGRNGDVGGSFGFSSSLSLSQPHLMEAHHQLHHHLDMAPQNTTSESDIAAAVRIRGEDEFDSATKSGSENQEGGASGGDQDPRPNKKKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENTQLRTDNDKLRADNMRLREALSNSSCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLLSPPSAPSRPLELGIGGFGGQPGVGGDMYGAGELLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTSLDGTTTVLNEDEYIRSFPRGIGPKPDGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVTWVEHVEVDERGVHNLYKQLVSSGHAFGAKRWISTLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMVISFCAGVSASTAHTWTTISGTGAETDDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAVLPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3487 773 SUPERFAMILY Bet v1-like 283 514 - -
Lja3g3487 773 SMART START_1 292 512 IPR002913 GO:0008289
Lja3g3487 773 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Lja3g3487 773 CDD homeodomain 102 160 IPR001356 GO:0003677
Lja3g3487 773 Pfam START domain 293 512 IPR002913 GO:0008289
Lja3g3487 773 ProSiteProfiles START domain profile. 283 515 IPR002913 GO:0008289
Lja3g3487 773 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Lja3g3487 773 CDD START_ArGLABRA2_like 287 511 - -
Lja3g3487 773 SUPERFAMILY Homeodomain-like 91 159 IPR009057 -
Lja3g3487 773 SUPERFAMILY Bet v1-like 532 765 - -
Lja3g3487 773 Gene3D - 337 510 IPR023393 -
Lja3g3487 773 Gene3D - 91 175 - -
Lja3g3487 773 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 64 770 - -
Lja3g3487 773 SMART HOX_1 100 163 IPR001356 GO:0003677
Lja3g3487 773 Coils Coil 165 185 - -
Lja3g3487 773 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 770 IPR042160 -
Lja3g3487 773 MobiDBLite consensus disorder prediction 73 111 - -
Lja3g3487 773 Pfam Homeodomain 102 157 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3487 Lja-Chr3 68676900 68683831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3487 72 773 Homeobox Transcription Factor Family AT1G05230 80.737 0.0 1148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja3g3487 START 2.4e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3487 K09338 - gmx:100797992 1307.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3487 3 68676900 68683831 Lja3g3487 3 68676900 68683831 ECH
Lja3g3487 3 68676900 68683831 Lja3g1094 3 11389310 11396249 PCT