Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3481 ATGAACGATCTTCTTACTGATTCATTTGTTGGTGATGCTACTTATGGCCAGCCTTCAAGACAAAATGATATTGAAATGGGAAGGCAGGATTCAAGAAGCAACTCTGATATGGGAATGGAAACTTTTAATAAGCAGACCCAAGAGATTGATAAACAAATTGAAAAGCTGTCCGGGCTACTTCAAAAGCTAAAGGAAGCTAATGAGGAATCAAAATCTGTTACAAAAGCATCTGCCATGAAAAGTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCACATGGTGTCAAAGCAAAAATAGAAGCTTTAAACAGAGATAATCTAGCCAATAGACAAAAGCCTGGCTGTGAGAAGGGAACGGGCGTTGACAGGGCAAGGATGAATATGGCAAATGCCTTGACTAAAAAGTTCAAGGATCTCATGATTGAGTTTCAGACTCTTAGGCAAAGAATACAAGATGAATATCGTGAAGTTGTCGAGAGAAGAGTTATTACAGTCACGGGAAGTAGGCCAGACGATGAGACAATTGATAACCTGATAGAGACTGGAAACAGTGAACAAATCTTTCAGCAGGCAATTCTCGAAGCAGGTCGAGGACAGATTGTGAACACGGTAGAGGAAATTCAGGAGAGACATGATGCTGTGAAAGAAATTGAGAAGAAACTTCTTGATTTGCATCAGATTTATCTTGACATGGCTGTCTTAGTTGATGCTCAAGGAGAGATTTTAGATAACATTGAAAGTCAGGTTAACAATGCAGTCGATCATGTCCAGAGAGGGACATCGGCACTTCAAAATGCTAAGAAACTCCAGAAGAACTCTCGGAAATGGATGTGTATTGCCATCATTATACTGTTGATAATAGTAGCTATCATAGTTGTTGGTGTTCTCCAACCTTGGAAGAGTAACAAGGGTGCTTGA 933 0.3966 MNDLLTDSFVGDATYGQPSRQNDIEMGRQDSRSNSDMGMETFNKQTQEIDKQIEKLSGLLQKLKEANEESKSVTKASAMKSIKKRMEKDIDEVGKIAHGVKAKIEALNRDNLANRQKPGCEKGTGVDRARMNMANALTKKFKDLMIEFQTLRQRIQDEYREVVERRVITVTGSRPDDETIDNLIETGNSEQIFQQAILEAGRGQIVNTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQNAKKLQKNSRKWMCIAIIILLIIVAIIVVGVLQPWKSNKGA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3481 310 PANTHER SYNTAXIN 11 301 IPR045242 -
Lja3g3481 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Lja3g3481 310 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Lja3g3481 310 CDD SNARE_syntaxin1-like 208 269 - -
Lja3g3481 310 SMART tSNARE_6 204 271 IPR000727 -
Lja3g3481 310 Coils Coil 134 154 - -
Lja3g3481 310 Pfam SNARE domain 245 297 IPR000727 -
Lja3g3481 310 MobiDBLite consensus disorder prediction 1 38 - -
Lja3g3481 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lja3g3481 310 Gene3D - 203 302 - -
Lja3g3481 310 SMART SynN_4 34 160 IPR006011 GO:0016020
Lja3g3481 310 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 11 301 - -
Lja3g3481 310 Gene3D - 34 163 - -
Lja3g3481 310 Coils Coil 46 76 - -
Lja3g3481 310 CDD SynN 39 196 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3481 Lja-Chr3 68514043 68518044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3481 1 310 SNARE and Associated Proteins AT3G03800 63.141 7.98e-125 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3481 K08486 - gmx:100807404 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3481 3 68514043 68518044 Lja3g3481 3 68514043 68518044 ECH