Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3480 ATGGCCGACACTGGTCGCTCTTCTGACAAAATTTCAGCAGTTTCTTCTGAGCAATCCGGTCAAGCTTCCAAGAATGAGTTTTCTGAAGATGAGGAGTTTCTTATTATCAGGATGTATAAACTGGTAGGGGAGAGGTGGCCTTTAATTGCTGGAAGAATTCCTGGAAGAACAGCTGAGGAAATAGAGAAGTATTGGACTTCAAGATACTCGAGTAGTTAA 219 0.4201 MADTGRSSDKISAVSSEQSGQASKNEFSEDEEFLIIRMYKLVGERWPLIAGRIPGRTAEEIEKYWTSRYSSS* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3480 72 MobiDBLite consensus disorder prediction 8 23 - -
Lja3g3480 72 CDD SANT 26 65 IPR001005 -
Lja3g3480 72 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 72 IPR017930 -
Lja3g3480 72 Pfam Myb-like DNA-binding domain 24 66 IPR001005 -
Lja3g3480 72 SUPERFAMILY Homeodomain-like 23 69 IPR009057 -
Lja3g3480 72 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lja3g3480 72 Gene3D - 26 68 - -
Lja3g3480 72 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g3480 72 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 10 72 - -
Lja3g3480 72 SMART sant 23 71 IPR001005 -
Lja3g3480 72 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 10 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3480 Lja-Chr3 68506631 68507873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3480 19 70 MYB Transcription Factor Family AT5G14750 48.077 8.95e-15 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g3480 Myb_DNA-binding 1.9e-08 CL0123