Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3476 ATGGAGCCAGTTTGCCCTATTTCTTCGCGTTGCGCCTCTGAAATCTCTGCTCTTCTTGCTCCTCCCTCACCTCTTCAACTTCAGGAATATTATCACACCCTTCTGTCTACAAGACAGTGCAGTGGCATCACAGTCAAACAAGATGAGAATTTTGAAAAGGGTTTATTTGCTGCCATGGACTTCAAAGAGGAGGAACTGGTTCTGAAGGACCACATGCTTGTGGGGGCTCAACACTCTTCCAACCAGATTGATTGCTTTGTCTGTAGCTACTGCTTTCGTTTTATTGGTTCCATTGAACATCAAATTGGAAGGAGGCTTCTCTTCCAAAGTCAAGCCAGTGAGAGTCATGATTGTGATGTGGGAAACTTTTCAGGCTCTTTAGATGCCTGCCATAAAATGGATTCATCTGATGAAGAGGAAGGCGATCGGCTATGTGCTTCTGCTAGTTCCAAAGCTAAAGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTGCTCAATGGCCAATTGATATTGCCTTTCACTGAGAAGTTCTCCTTGCCGTCGGATGTTCCGTGTCGTGGTGGATGTGGAGAAGCTTACTATTGCAGCGAGTCATGTGAAGACGCTGGTTGGGAATCCTCTCATTCTTTACTCTGTACTGGTGATAGTAATGATCCAGCACGTTTGGTGGCGCTCGATAAATTCTTCAAACATGCTAATGATACAAATGACATATTCATCCTTGCAGCAAAGGCCATTTCTTCTACCATATTAAGGTACCGCAAGTTAAAAGCAAATTTCCTTGAAGAGCAAGTGACATATGATACATCCCGTGTTTCAAATCACTGCAATTTCTCTCTTCTTTTGGAAGCTTGGAGGCCTATATCAATGGGACACAAGAAAAGGTGGTGGGACTGCATTGCATTGCCAGATGATATTGATTCTTCTGATGAAGCTTCATTCAGGATGCAAATAAAAGAGTTAGCATTTGAGTCTCTCCAACTTCTCAAGACAGCTATATTTGACAAGGAATGTGAAGCATTATTTTCCCTTGAAATCTTTGGACACATCATTGGCATGTTTGAGCTGAATAATCTCGATTTGGTTGTGGCCTCTCCTGTGGAGGATTACTTTTTATACATTGATGATATGACACATCCCGATAAGGAAAAAGCTGAGAAAATTACACAACCTATTCTGGATGCTCTTGGTGAAGACTATTCTATTTGTTGCCAAGGATCTGCGTTTTATCCTCTGCAAAGCTGCATGAACCATTCCTGTTATCCTAATGCCAAAGCTTTCAAAAGAGATCAGGATATAGATGGCCAAGCAACAATAATTGCCCTGAGGTCCATTTGTAAAGGAGAAGAGATAACCATCTCCTATGTTGATGAGGACCTTCCACTTGAAGAGAGACAGGCATCGCTTGCAGATTATGGTTTTAAATGCAGGTGTCCAAAGTGCATTGAAGAAGAGCCATGA 1461 0.4237 MEPVCPISSRCASEISALLAPPSPLQLQEYYHTLLSTRQCSGITVKQDENFEKGLFAAMDFKEEELVLKDHMLVGAQHSSNQIDCFVCSYCFRFIGSIEHQIGRRLLFQSQASESHDCDVGNFSGSLDACHKMDSSDEEEGDRLCASASSKAKVPLPEGVVESLLNGQLILPFTEKFSLPSDVPCRGGCGEAYYCSESCEDAGWESSHSLLCTGDSNDPARLVALDKFFKHANDTNDIFILAAKAISSTILRYRKLKANFLEEQVTYDTSRVSNHCNFSLLLEAWRPISMGHKKRWWDCIALPDDIDSSDEASFRMQIKELAFESLQLLKTAIFDKECEALFSLEIFGHIIGMFELNNLDLVVASPVEDYFLYIDDMTHPDKEKAEKITQPILDALGEDYSICCQGSAFYPLQSCMNHSCYPNAKAFKRDQDIDGQATIIALRSICKGEEITISYVDEDLPLEERQASLADYGFKCRCPKCIEEEP* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3476 486 Pfam SET domain 119 455 IPR001214 GO:0005515
Lja3g3476 486 ProSiteProfiles SET domain profile. 41 456 IPR001214 GO:0005515
Lja3g3476 486 Gene3D SET domain 376 485 IPR046341 -
Lja3g3476 486 CDD SET_SMYD 395 481 - -
Lja3g3476 486 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 485 IPR044237 GO:0008168
Lja3g3476 486 SUPERFAMILY HIT/MYND zinc finger-like 187 213 - -
Lja3g3476 486 SUPERFAMILY SET domain 37 481 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja3g3476 SET 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3476 - - gmx:100803651 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3476 3 68402816 68411389 Lja3g3476 3 68402816 68411389 ECH