Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3471 ATGGAACCACTATGTGAGTTTTGTGGGGTTGCAAGAGCTGCGGTTTATTGCAAGCCAGATTCTGCTCGTCTTTGCATGGATTGTGATGGCATTGTGCACTCTGCAAATTCTCTGTCTCGGAGGCACCCTCGTTCGTTTCTCTGTGATAAGTGCAATTTCGACTCAGCAACTGTTCGATGTAATGAATTTAAGCAAATTCTGTGTCAAGCTTGTGATTTGAATTCATATGATTGTATGGTTTTGGGACATAGGCATCAGCCACTGAATTTCTACACTGGTTGTCCATCTAATACTGAGTTTTCGAAGCTTTTGTCACATGTGTTTGATGCTAATTCCTCATGTGGAGGTTGGGAATCAGTTACTACATTGCTTAAAAATGACACTAGTAAGCATTTGGAGCAACCTGATAAGGGTGGTTCTTCTGGTTTGGTGAGTGATAAGTTGGATGAAGTAGTGGAGCAATGTGTTAAGTTTGAACCGTGGACTGGACAATCTTCCATCATTCCCACTAAACCAAATCACACTCAGTATGGCAAAGATCCAGCATTTTTCTTTCCTCAAGACTCAAACCAGCAAAAGGGATGTCCTAATGTCAAAGATCTAGGAATTAATGAAGGGAATGGTCTCTGTGAAGGCCTCAATGTGGATGATGTTCAATTAAACTTTGAAACTACTGCTGAAATATTTGACTGCTCTCAAGGTGCCCCAAGATACCAGCTTGAAGGTGGAGAAATGGACTGTTTGTTAATGGATAATAAGAACATAATAGTCACAAAATCTAAAAGTCTTCTTGAGAGCACCATGGAGGCATCATCGTCAGTCCAACAAGATTGTGTGGCTTTTTCACCATCCGGGGCCGGCGGCTCCTCTAGTGTGATGCAGAACATCAACAGCAATGCAAACTGTGCACTAATGACTCCTAGCTGCAACAGAAACATCAATCTGGGATTTCCTCAGGGTCAAATTCCTTCAAACATACCAATTCAATTACCCAACATTTCTGGTGAAAACAATGCTACTGAATATCAAGATTGTGGGCTATCTTCAATGTTTCTGCCAGGAGAATCCCCTTGGGAATCGAGTTTGGAGAGTACATGTCCACAAGCAAGGGATAAAGCTAAGATGAGATACCATGAGAAAAAGAAGACTCGAACGTTTGGTAAGCAAATAAGATATGCGTCTCGCAAAGCGAGAGCGGATACCAGAAAACGTGTGAAAGGAAGATTTGTTAAAGCAGGTGAAGAATATGATTATGATCCTCTTCTGACACCAGAAACCTAA 1281 0.4161 MEPLCEFCGVARAAVYCKPDSARLCMDCDGIVHSANSLSRRHPRSFLCDKCNFDSATVRCNEFKQILCQACDLNSYDCMVLGHRHQPLNFYTGCPSNTEFSKLLSHVFDANSSCGGWESVTTLLKNDTSKHLEQPDKGGSSGLVSDKLDEVVEQCVKFEPWTGQSSIIPTKPNHTQYGKDPAFFFPQDSNQQKGCPNVKDLGINEGNGLCEGLNVDDVQLNFETTAEIFDCSQGAPRYQLEGGEMDCLLMDNKNIIVTKSKSLLESTMEASSSVQQDCVAFSPSGAGGSSSVMQNINSNANCALMTPSCNRNINLGFPQGQIPSNIPIQLPNISGENNATEYQDCGLSSMFLPGESPWESSLESTCPQARDKAKMRYHEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEEYDYDPLLTPET* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3471 426 CDD Bbox1_BBX-like 4 47 - -
Lja3g3471 426 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
Lja3g3471 426 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lja3g3471 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 421 - -
Lja3g3471 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lja3g3471 426 Pfam CCT motif 370 412 IPR010402 GO:0005515
Lja3g3471 426 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Lja3g3471 426 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 2 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3471 Lja-Chr3 68361662 68365783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3471 1 420 C2C2-CO-like Transcription Factor Family AT3G21880 40.758 4.17e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja3g3471 CCT 9.1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3471 - - gmx:100804738 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3471 3 68361662 68365783 Lja3g3471 3 68361662 68365783 ECH