Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3458 ATGGACCCCATGTTTTCCGGCGACTCCTCCGCCTTAGACCCTATGTTTTCCGGCATCAGCCTCCACCACCTCCTCACCCTCAACCCCTCTCTCTTCCCTGACCAACAACCCAACCTCCACGCCGCCGACACCATCAACCTTCTCACCCCAAAATCCGAGTACCCCAACTTCGAAAACCACCAACAACAACAACTCTTCACTTCCTCCTACCCTGATTACCCTCCTGAACAACCCTTCAACATCTTCCCCCACTTCCAACCACCACCACCACCACATTTCCACCACCTCCCCCAACTCCACTCGCCGGAGACTCCCTACTGGAAACGCTTCCGCCATCAGGAGATAGAAACCTTCTCTCCTCCTCCTCCTCCAGCACCGGCGGTGATTCTTCAGAGCCACCTTGCCCGCCAGAGGAGGCAGAAGCTGAGCGAGAAGACACGCTGCCTGCAGAAGCTGATGCCATGGGACAAGAAGATGGACCAGGGGACCCTTCTCGAAGAGGCCTACAAGTACGTCAAATTCTTACAAGCCCAAACCTCCGTCCTTCAGTCCATGCCCACCACCACCCGTTTCGCCGCCGCCTCCGCCGGCGGCGTTTTCGGCGAGATGGAGAGGCTGAACAGGAGCCAGGCGTTGCAGATTCTGGTGAACTCGCCTGTTGCTCAAACCATGCTTTACTCAAAAGGGCTCTGTGTTTTCTCTGTTGAACAGGTTGCTTTGCTCAGAAAATTTACAGAGAGAAAGCAGCATCAGCATCAGCATCACCATTTCCATCAGAATCAGATTCAGGAGCAGGAACAGGAGCAAGAAATGTCTGATCATGATTCCTCCAAAACTTTCTTGAACTAA 849 0.5395 MDPMFSGDSSALDPMFSGISLHHLLTLNPSLFPDQQPNLHAADTINLLTPKSEYPNFENHQQQQLFTSSYPDYPPEQPFNIFPHFQPPPPPHFHHLPQLHSPETPYWKRFRHQEIETFSPPPPPAPAVILQSHLARQRRQKLSEKTRCLQKLMPWDKKMDQGTLLEEAYKYVKFLQAQTSVLQSMPTTTRFAAASAGGVFGEMERLNRSQALQILVNSPVAQTMLYSKGLCVFSVEQVALLRKFTERKQHQHQHHHFHQNQIQEQEQEQEMSDHDSSKTFLN* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3458 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Lja3g3458 282 MobiDBLite consensus disorder prediction 249 282 - -
Lja3g3458 282 PANTHER TRANSCRIPTION FACTOR BHLH117 5 260 - -
Lja3g3458 282 SMART finulus 132 181 IPR011598 GO:0046983
Lja3g3458 282 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 260 IPR045843 GO:0003700|GO:0006355
Lja3g3458 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 189 IPR036638 GO:0046983
Lja3g3458 282 MobiDBLite consensus disorder prediction 257 275 - -
Lja3g3458 282 Gene3D - 131 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3458 Lja-Chr3 68279490 68280338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3458 138 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 43.519 5.72e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3458 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3458 - - lja:Lj0g3v0307149.1 493.041