Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3453 ATGCAAGCCACGTCCTCACACAGCCCCATGAAAGCAGAGCTAAAGCCACCAACCTCCATCTCCTTCCAAAACCCCACCACCACCCCTCTCTTCAACACACCCCACACTAGTACTCCCCTCTCAGGAGCACTCAAAGGTTGTCTTGGAAGCCTTGATGGCGCATGCATCGAGAAGCTCCTCCTCCACTGTGCCAGCGCCTTAGAGAGCAACAACATCACCTTAGCTCAACAAGTCATGTGGGTCCTCAACAACGTCGCTTCTCCCCAAGGCGACACCAACCAGCGCCTCACCGCGTGGTTTCTCAGAGCACTAATCTCCAGAGCTTCAAGAATTTGCCCCTCCGTGATGAGTTTCAAGGGAAGCAATAACATTCCTAGGAGGTCAATGACCGTGACCGAGCTAACAGGGTATGTGGATCTCATTCCATGGCACAGGTTCGGGTTTTGTGCATCAAACAATGAAATTCTCAAAGCTGTTACAGGGTTTCAAAGGGTACATGTTCTTGATTTCAGCATAACCCCTTGTATGCAATGGCCTACTTTTATAGATGCATTAGCTAAAAGACCAGAAGGTCCTCCTTCACTTAGAATCACAGTTCCATCTTTTAGGCCACAGGTTCCTCCATTAGTCAACATTTCAATACATGAAGTTGGGTTACGCTTAGGTAATTTCGCCAAATTCAGAGATGTCCCTTTTGAATTTCATGTCATAGGAGATGAAAATTTACTACCATCAGAACAATTGAGCAATGAATCAACCAGATTTCAATTTGAGTCCTTGTTGAGTCTATTGAATCCTAGTGTGTTAAACATTAGGGAAGATGAAGCATTGGTGATCAATTGCCAAAATTGGCTACGTTACTTGTCTGATGATAATAGAAATTCAAATTCCCTTAGGGATGCTTTTCTGAGTTTAATTAAAGGTCTTAGCCCTCAAATTGTGCTCTTGGTTGATGAGGATTGTGATCTCAGTGCGTCGAGCCTCGTGTCGAGAATCACCGCTTGTTTCAACCATCTGTGGATACCCTTTGATGCACTGGACACTTTTTTGCCTAAGGATAGTTCTCAGAGGACAGAGTTTGAGTCTGACATAGGACAGAAAATTGAGAACATCATAGGGTTTGAAGGTTATCAGAGAATAGAGAGATTGGAGTCTGGGGTGAAGATGTCACAAAGAATGAAGAATTCAGGGTACTTCAGTGTTCCATTTTGTGACGGAACTGTTAAGGAAGTTAAGGGTTTGCTTGATGAACATGCCGGTGGATGGGGGATGAAGAGGGATGAAGGTATGTTGGTTCTCACGTGGAAGGGAAACAGCTGTGTATTTGCGACAGCTTGGGTCCCTAGTGAAATGAGGGATCATGTTGGTATGGATGCAACTCTATCTTAA 1389 0.4471 MQATSSHSPMKAELKPPTSISFQNPTTTPLFNTPHTSTPLSGALKGCLGSLDGACIEKLLLHCASALESNNITLAQQVMWVLNNVASPQGDTNQRLTAWFLRALISRASRICPSVMSFKGSNNIPRRSMTVTELTGYVDLIPWHRFGFCASNNEILKAVTGFQRVHVLDFSITPCMQWPTFIDALAKRPEGPPSLRITVPSFRPQVPPLVNISIHEVGLRLGNFAKFRDVPFEFHVIGDENLLPSEQLSNESTRFQFESLLSLLNPSVLNIREDEALVINCQNWLRYLSDDNRNSNSLRDAFLSLIKGLSPQIVLLVDEDCDLSASSLVSRITACFNHLWIPFDALDTFLPKDSSQRTEFESDIGQKIENIIGFEGYQRIERLESGVKMSQRMKNSGYFSVPFCDGTVKEVKGLLDEHAGGWGMKRDEGMLVLTWKGNSCVFATAWVPSEMRDHVGMDATLS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3453 462 Pfam GRAS domain family 57 446 IPR005202 -
Lja3g3453 462 ProSiteProfiles GRAS family profile. 47 447 IPR005202 -
Lja3g3453 462 PANTHER OS05G0500600 PROTEIN 11 448 - -
Lja3g3453 462 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 448 IPR005202 -
Lja3g3453 462 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3453 Lja-Chr3 68194227 68195646 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3453 36 448 GRAS Transcription Factor Family AT3G49950 45.390 8.48e-116 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja3g3453 GRAS 5.9e-89 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3453 - - gmx:100802093 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3453 3 68194227 68195646 Lja3g3453 3 68194227 68195646 ECH