Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3450 ATGATAACTTTTCGCTTCCTCATAACACTTTCACTTCCCTTCCTATTTTTCTCTTTCATAGTTTCAGGTTATTCCTGGAACAAAGTTCAGAATTGGTGCAATCAAACTCCAAATCCTGAACCTTGTAACTATTTATTGACCAACAATCCTAGTTACCAACACAACCTTATCAAGAACAAAGCTGATTTCTACAAGCTCTCATTGCAACTCGCTCAAGAGCGAGCACTCAAAGGACATGCAAACACTCTCTCACTTGGTCCAAAATGCAACAACAACCCACGCGTCAAATCCGCGTGGGCTGATTGTGTTGAGCTGTACGAGCAAACCATCATTCAGCTCAACAAAACCTTAGACCCTAACACCAAATGCTCCCAAGTTGACACCCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCCGGGTTCTACGAGCTTGGAGTTGAAAACTATGTTCTTCCTCTCATGTCCAATAATGTTACTAAGTTGCTAAGCAACACTTTGGCTCTCAACAAGGTTCCTTACCAACAACAACCTAGTTATAACCAAGATGGGTCGTTTCCAACATGGGTGAAGCCTGGTGATAGGAAGCTGCTGCAAACATCGTCGGCACCTGCTTCGAAGGCGAACGTGGTGGTGGCGAAAGATGGGTCTGGAAAGTACACAAGTTTAAGTGCTGCCATCAATGCTGCACCAAAGAAGGGAAGTGGGAGGTATGTGATATATGTGAAGGCTGGTGTTTACAATGAACAAGTTGAGATAAAGGCAAAGAATATCATGTTGGTGGGAGATGGTATTGGCAAAACTATAATCACCGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTTCGTTCAGCTACTGTTGCTGCTGTTGGGGATGGATTCATAGCTCAAGACATCACATTTAGAAACACTGCTGGAGCAAAAAACCACCAAGCTGTTGCACTTCGTTCTGGATCAGACTTATCAGTGTTTTACAGATGCAGCTTTGAAGGCTACCAAGACACACTCTATGTCCATTCCGACAGACAATTCTACAGAGAATGCAACATCTACGGCACAGTTGACTTCATATTCGGTAACGCGGCTGCCGTATTCCAAAATTGTAACATCTTTGCGAGAAACCCTCCCAACAAAGTGAACACAATCACAGCACAAGGAAGAACAGATGCGAACCAAAACACAGGCATTTCCATTCACAATTCAAGGGTTTTGGCCGCCTCGGATTTGAAACCGGTCCAGAGCTCGGTTAAGACTTATCTTGGTAGACCATGGAAGCAATATTCGAGAACAGTTTTCATGAAGACAAGTCTTGATAGTTTGATCCACCCCGCGGGTTGGTTGGAATGGAGCGGCGATTTTGCATTAAAGACTCTGTATTATGGAGAGTACATGAACACAGGTTCTGGCTCTTCAACAAAGAGTAGAGTTAAATGGCAAGGTTATCATGTGATGACAAGTGCTTCTGAAGCTTCAAAGTTCACTGTGGGTAATTTCATTGCTGGAAACTCCTGGATACCTGCAACCAAAGTGCCTTTTACATCTTCTCTGTAG 1566 0.4393 MITFRFLITLSLPFLFFSFIVSGYSWNKVQNWCNQTPNPEPCNYLLTNNPSYQHNLIKNKADFYKLSLQLAQERALKGHANTLSLGPKCNNNPRVKSAWADCVELYEQTIIQLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVENYVLPLMSNNVTKLLSNTLALNKVPYQQQPSYNQDGSFPTWVKPGDRKLLQTSSAPASKANVVVAKDGSGKYTSLSAAINAAPKKGSGRYVIYVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAKNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSDRQFYRECNIYGTVDFIFGNAAAVFQNCNIFARNPPNKVNTITAQGRTDANQNTGISIHNSRVLAASDLKPVQSSVKTYLGRPWKQYSRTVFMKTSLDSLIHPAGWLEWSGDFALKTLYYGEYMNTGSGSSTKSRVKWQGYHVMTSASEASKFTVGNFIAGNSWIPATKVPFTSSL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3450 521 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 176 IPR035513 -
Lja3g3450 521 Gene3D - 208 521 IPR012334 -
Lja3g3450 521 CDD PMEI-like_3 32 175 - -
Lja3g3450 521 Pfam Plant invertase/pectin methylesterase inhibitor 29 173 IPR006501 GO:0004857
Lja3g3450 521 SUPERFAMILY Pectin lyase-like 207 518 IPR011050 -
Lja3g3450 521 SMART complete 246 424 IPR006633 -
Lja3g3450 521 ProSitePatterns Pectinesterase signature 2. 355 364 IPR033131 -
Lja3g3450 521 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 176 IPR006501 GO:0004857
Lja3g3450 521 SMART PMEI_2 24 173 IPR006501 GO:0004857
Lja3g3450 521 PANTHER PECTINESTERASE 5 520 - -
Lja3g3450 521 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 176 IPR035513 -
Lja3g3450 521 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Lja3g3450 521 PANTHER PECTINESTERASE 5 520 - -
Lja3g3450 521 Pfam Pectinesterase 213 507 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3450 Lja-Chr3 68101428 68103472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3450 1 521 Carbohydrate Esterase AT2G45220 66.667 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3450 K01051 - gmx:100783428 867.455