Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3449 ATGGCATCACTTAATTTGCTTATAACAACCCTTCTAATAGTTCCCATTTTATTTTCCTCTTGTGTTTTTTCCTACTCTTTGAGCTCCATCAAATCATGGTGTAGCCAAACCCCTTACCCTCAGCCATGTGAGTACTACTTGAGCAACAATGCCTTCAACAAACCCATTAAAAACAAGTCAGATTTCTTCAAAGTGTCTCTTGAACTCGCCATGCAACGAGCACAAATGGGCCAACAAAACACCCACTCACTAGGCTCAAAGTGCAGAAGCCCAAGCGAAAGAGCCGCATGGGCCGATTGCCTTGAGCTCTACGAATACACCATCGAAAAGCTTAACAAAACCGTGGCCCCTCATGTCGGATGCACACAGACCGATTTCCAAACCTGGCTCAGCACAGCTCTTACAAACCTTGAGACGTGCAGGGCTGGGTTCTATGAACTTGGGGTAACGAACTATGTGTTACCGTTGATGTCCAACAATGTCACCATGTTATTAAGTAACACCTTGTCCCTAAACAAGGTTGTTCCTTTCCAGCAGCAACAACAACCACCAAGTAACAAAGATGGGTTCCCGACGTGGGTGAAGCCTTGTGACAGGAAGCTGCTACAAACATCATCAGCGGCTTCAAAGGCGAACGTGGTGGTGGCAAAAGATGGGTCTGGAAAGTACACGAGTGTGAGTGCCGCGGTGAACGCTGCACCCAAGAGTGGAAGTGGGAGGTATGTGATATATGTGAAGAGTGGGGTTTACAATGAACAAGTTGAGATCAAAGGAAAGAATATCATGTTGGTGGGAGATGGTATTGGCAAGACCATAATCACTGGTAGCAAAAGCGTTGGAGGTGGCACCACAACCTTCCGTTCAGCTACTGTTGCTGTTGTGGGTGATGGATTCATTGCTCAAGACATCACATTCAGAAATACTGCAGGAGCAGCAAATCACCAAGCTGTGGCGCTTCGTTCTGGTTCAGATCTCTCAGTATTCTACAAGTGCGGCTTTGAAGGTTACCAGGACACACTCTATGTCTACTCAGACAGACAATTTTACAGAGAATGTGACATCTATGGTACAATTGATTTCATCTTCGGAAATGCTGCTGTGGTTTTGCAAAACTGCAACATTTATGCGAGAAACCCTACTCAAAAAACCATCACAGTCACTGCTCAAGGCCGAACCGACCCGAACCAGAACACCGGAATCATCATCCACAATTCCAAGGTTACTGGTGCCTCAGGTTTCCAGTCGAGCTCTGTTAAGTCATACCTTGGTAGGCCTTGGCAAAAATACTCAAGAACTGTATTCATGAAAACTAATCTTGATAGTTTGATTAACCCTGCTGGTTGGATGCAATGGAGTGGTAACTTTGCTTTGGATACTCTGTACTATGCAGAGTATGCTAACACTGGACCCGGTTCATCCACTTCGAACCGGGTCACTTGGAAGGGTTACCATGTTCTCACTAGTGCATCTCAGGCTTCACCTTTCACTGTTGCCAACTTCATTGCTGGTAACTCATGGATTACAAGCACTGGTGTGCCTTTCACTTCAGGGCTCTAA 1557 0.4579 MASLNLLITTLLIVPILFSSCVFSYSLSSIKSWCSQTPYPQPCEYYLSNNAFNKPIKNKSDFFKVSLELAMQRAQMGQQNTHSLGSKCRSPSERAAWADCLELYEYTIEKLNKTVAPHVGCTQTDFQTWLSTALTNLETCRAGFYELGVTNYVLPLMSNNVTMLLSNTLSLNKVVPFQQQQQPPSNKDGFPTWVKPCDRKLLQTSSAASKANVVVAKDGSGKYTSVSAAVNAAPKSGSGRYVIYVKSGVYNEQVEIKGKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYKCGFEGYQDTLYVYSDRQFYRECDIYGTIDFIFGNAAVVLQNCNIYARNPTQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFQSSSVKSYLGRPWQKYSRTVFMKTNLDSLINPAGWMQWSGNFALDTLYYAEYANTGPGSSTSNRVTWKGYHVLTSASQASPFTVANFIAGNSWITSTGVPFTSGL* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3449 518 CDD PMEI-like_3 32 173 - -
Lja3g3449 518 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 174 IPR006501 GO:0004857
Lja3g3449 518 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 174 IPR035513 -
Lja3g3449 518 ProSitePatterns Pectinesterase signature 2. 354 363 IPR033131 -
Lja3g3449 518 Pfam Pectinesterase 212 504 IPR000070 GO:0030599|GO:0042545
Lja3g3449 518 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 175 IPR035513 -
Lja3g3449 518 Gene3D - 206 518 IPR012334 -
Lja3g3449 518 PANTHER PECTINESTERASE 5 517 - -
Lja3g3449 518 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Lja3g3449 518 Pfam Plant invertase/pectin methylesterase inhibitor 29 171 IPR006501 GO:0004857
Lja3g3449 518 PANTHER PECTINESTERASE 5 517 - -
Lja3g3449 518 SUPERFAMILY Pectin lyase-like 206 517 IPR011050 -
Lja3g3449 518 SMART PMEI_2 25 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3449 Lja-Chr3 68080218 68083800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3449 1 518 Carbohydrate Esterase AT2G45220 65.577 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3449 K01051 - gmx:100782892 852.818