Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3448 ATGCGATTCAAGCTCGGCAAGCGCGTGACCCGGGTCACAAAATGGATCTTCAGGAGGTTCAAGACCCGACCCGGATACCGCCGATTGAATCCATCTCCGGCGAGAATCGGCAACGGAAGCACCATGGCGAAGCTTCTCACGTGGGGACGGAAGCTAACGAAGGGAGCGAAATCCCTCTGCGCGAGAAACGGGTCGGGTTACATTCCGGTTGAATCCGAAAAGACCCCGGCGGCGGTGCCAAAGGGGCATCTGGCGGTGTACGTGGGGCAGAAAGACGGGGAGTTTCACCGCGTTCTGGTGCCGGTGGTGTACTGCAACCACCCTTTGTTCAGTGATTTGCTGAGGGAAGCGGAGAGGGAGTACGGGTTTCACCACCCGGGTGGGATCACGATTCCTTGCCGGGTCACCGAGTTTGAACGTGTCAAGACCCGAATTGAGTCCGGGTCGGGTGGCCGTGGCGGTTTGGTGCGGCGGCGACTTTGTTGA 486 0.5947 MRFKLGKRVTRVTKWIFRRFKTRPGYRRLNPSPARIGNGSTMAKLLTWGRKLTKGAKSLCARNGSGYIPVESEKTPAAVPKGHLAVYVGQKDGEFHRVLVPVVYCNHPLFSDLLREAEREYGFHHPGGITIPCRVTEFERVKTRIESGSGGRGGLVRRRLC* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3448 161 Pfam Auxin responsive protein 63 142 IPR003676 GO:0009733
Lja3g3448 161 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 158 IPR003676 GO:0009733
Lja3g3448 161 PANTHER SMALL AUXIN-UP RNA-RELATED 2 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3448 Lja-Chr3 68073749 68075332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3448 71 147 Calmodulin-binding Proteins AT3G43120 46.753 6.54e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3448 K14488 - gmx:100796005 199.904