Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3446 ATGTCCGCCTCATCCACTTCCTTTTCACCGGACCAGCTGCAGCAGCAGCAGCACCACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTGAGATGCGGCCATTGCTCCAACCTTCTCTCTGTGAACATGCGTGGGCCGCTTCTTCCTGCTGCAAATCAACTTCACCTTGCTCACTCCTTCTTCACTCCTCAAAATATTCTGGAGGAGATTAGAAATGGACCTTCAACAAACATGATGATGAATCAGCTGCCAAACCAAAATGACTTGGTCATGAGCACCATGCGAGGAGGGCATGAAGAAATCCCTAAGCCTCCACCAGCTAACAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAAGCTGGGAATCCTGATATCAGCCACAGAGAGGCTTTTAGTGCTGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGACCATCAACCCGTGAAGAAAGCTAATGCCCGTCAGGACGCAGAGGACGTGCTTTTGAAAGATGGGTTTTTCGCACCGGCAAATGTAGGTGTCTCTCCCTACTAG 666 0.4985 MSASSTSFSPDQLQQQQHHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCSNLLSVNMRGPLLPAANQLHLAHSFFTPQNILEEIRNGPSTNMMMNQLPNQNDLVMSTMRGGHEEIPKPPPANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANARQDAEDVLLKDGFFAPANVGVSPY* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3446 221 Gene3D High mobility group box domain 125 203 IPR036910 -
Lja3g3446 221 PANTHER PROTEIN YABBY 4 1 219 - -
Lja3g3446 221 MobiDBLite consensus disorder prediction 120 139 - -
Lja3g3446 221 Pfam YABBY protein 22 185 IPR006780 GO:0007275
Lja3g3446 221 PANTHER PROTEIN YABBY 6-RELATED 1 219 IPR006780 GO:0007275
Lja3g3446 221 SUPERFAMILY HMG-box 130 179 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3446 Lja-Chr3 68021430 68024537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3446 33 219 C2C2-YABBY Transcription Factor Family AT4G00180 62.381 1.25e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lja3g3446 YABBY 5.2e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3446 K25796 - gmx:100781267 399.053