Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3440 ATGTATCTTTTGTTAAACGTTCTGGAAATAAGGTGGCGGATTACCTTGAGTTTCCTATCTGAAGACCCTACTCCACTACAAGAGCTGAACTTGCAAACATCTTTCTCTAACGATAGCAACCACTCTTTCTCCTCAGGGGATGATGAAAACAGCTTCGAGAAGCCTTCCAAGGCACTTAAGACGGCTGACACCGCGAACTTCCCACTGCAGAATGGTGCTTCTCCCTTCTATATTCTTTCATTTAACAATGAGAACGAAGCACCAATTTTGAACTTTGATTCGACCTTGAAGTCAAAAGACAATGCTGTGAATGTGAATGTGAATCAGCATGAGAACAGGTCTAATTTTCCCTCAAAGAGGTCCTTGAATTGTCAAAAGAAGGAACCAAAACGCAAAGTACATGAGAGGGAGAGGGTCAGATCTCCTCACCAAGCTCACGATCACATAATGGCTGAGAGAAAGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCTCTTTCAGTTCTGATTCCGGGCCTCAAAAAGATTGATAAGGCTTCTGTGCTGGGGGACGCTATACAGTATATGAAACAGCTCCAAGAGCAGGTGAAGCTTCAGGAAGAGCAAATCAAAAGGAAAAGCGCAGAGTCTGTGGTGTATGTTGAGAAATCTGAGTCCTCTGTGGTGGACGATGATGTCTCAAACACATCCTCAAATTCAGGCACCGCAAATAATAATGTCTCACAGCCTGAAGTTGAGGCAAGGGTGTCAGAGAACAAAGTGTTGATCCGAATTCACTGTGATAAACAGGAGGGGGTGTTGATGAACATACTCAAAGAGATAGATAATCTTCATCTATCTGTGATCAATAGCAGTGCCTTGCTTTTCGGGACCTCCAAATTGGACATAACCATCATAGCTGAGATGGATGAGGAGTTCAGGATGAGCGTGAAGGAACTGGCTAGAAAGCTTCGAGTGGAACTCCTGCAATTCATGTTGCATTCATTCAGTTAA 993 0.435 MYLLLNVLEIRWRITLSFLSEDPTPLQELNLQTSFSNDSNHSFSSGDDENSFEKPSKALKTADTANFPLQNGASPFYILSFNNENEAPILNFDSTLKSKDNAVNVNVNQHENRSNFPSKRSLNCQKKEPKRKVHERERVRSPHQAHDHIMAERKRREKISQQFIALSVLIPGLKKIDKASVLGDAIQYMKQLQEQVKLQEEQIKRKSAESVVYVEKSESSVVDDDVSNTSSNSGTANNNVSQPEVEARVSENKVLIRIHCDKQEGVLMNILKEIDNLHLSVINSSALLFGTSKLDITIIAEMDEEFRMSVKELARKLRVELLQFMLHSFS* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3440 330 Pfam Helix-loop-helix DNA-binding domain 148 193 IPR011598 GO:0046983
Lja3g3440 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 209 IPR036638 GO:0046983
Lja3g3440 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Lja3g3440 330 SMART finulus 149 198 IPR011598 GO:0046983
Lja3g3440 330 Gene3D - 140 212 IPR036638 GO:0046983
Lja3g3440 330 PANTHER BHLH TRANSCRIPTION FACTOR 30 322 - -
Lja3g3440 330 MobiDBLite consensus disorder prediction 37 56 - -
Lja3g3440 330 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 30 322 - -
Lja3g3440 330 Coils Coil 182 209 - -
Lja3g3440 330 MobiDBLite consensus disorder prediction 222 243 - -
Lja3g3440 330 MobiDBLite consensus disorder prediction 223 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3440 Lja-Chr3 67959414 67961530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3440 140 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.387 3.54e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja3g3440 HLH 6.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3440 - - lang:109348843 254.603