Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3422 ATGGTGTATTTCTTTTTCTTTTGGTCATTTCTGTTAGTGCTGTTTTCATTTGTCACTCGGTTACTTCTCAAACGGAAGGGTGTAGCAGTAGTGTCAGACAACGCTCCTCAAACAAACTGGTATGATGCTGTGGACACCCAACAAGAAGAAAAGTATGATGTTTTTGTTAGCTTCAGGGGCGAGGACATCCGTGACGGTTTTCTCAGCCATCTAGCAGTGGCTTTTCATCAAAAGAAAATAAATGCCTTTGTGGATGACAAGCTTCAGAGGGGTGAAGAAATATGGCCATCACTTGTTGGAGCTATTGAAGGATCATTGATTTCAGTGATCATATTCTCTGAAAACTACGCTTCTTCAACTTGGTGTTTGAAAGAACTGATCAAAATACTTGAGTGCAGAGACAAGTATGGACACACTCTAATACCAATTTTTTACGGAGTAGATCCCACAGATGTACGACATCAGACAAGGAGTTATGTATCTGCATTTGCTGAGCATCGAAAAAAATTTGATCCGACCATGGTGCAAATATGGAGGGATGCTTTGAATAAATCTGCTAATTTATCGGGAATTAAGTCATTAGATTTTGGGAATGAAGCAGAGCTGCTTGAAAAGATCATCAATGAAGTGTTGCATCAGTTAAGGAGGTTGAGTAAGCACACACCTAACTCAAATGGACTTGTTGGAATCGGAAAATCAATTGCTGATATAGAAGCCTTGCTGCTTAAAGACTCAAAAGATGTCCGTAAAATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGCAGAACAAGTGTTCAGTAAAATATGTTCTCAGTATAAAGGTACCTGTTTTTTGTCAAATGTAAGAGAAGAGTCAACAAAACATGGAATAATTTATTTGAAAGAAAAACTTTTCTCCACACTATTAGCAGAAGATGTGAAAATAAAGTCGCCAAATGGATTGTCTGATGATATTCGGAGAAGGATTATTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTTGATCGGCTTGAATTATATGGAACCGTTGATAAGTTTGGACGGGGCACTAGAATAATTGTAACAACTAGAGATCAACAAGTGCTCATCGCTAACAAAGTTGATGATATACATCACGTTGGAGAATTGACCTCTAGTGAATCACTTGAGCTTTTCAATTCGATTTCCTTTAACCAAAGTCACCTGGAAACACAGTTTCATGAAACATCAAAGAAACTTGTTGATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTAAGCTTCTTCATGGAAAAGGTGATGAAGTGTGGGAAAGTCAGCTAAACAAGCTCAAGCAAATGCCAAGTCCAGAAGTTTATGATGTACTGAGATTGAGTTATGATGATCTAGACCGCAAAGAGCAAAGGATTTTTCTGGATCTTGCGTGTTTCTTTAAAGGATTGGATTTTAAGGTGGAATTACTAAAAACTTTATTGAAAGATTGTGAAAGTGACAATTCAGTGGCTCATGGGTTAGAAAGGCTGAAAGATAAGACTCTTATAGTTATTTCTGAGGATGGTGTTGTATCTATGCATGATCTTATGGAAGAAATAGCTTGGGAGATTGTTCGCCAAGAATCTAAAGACGACATTGGAAGCCAAAGTCGATTGGGGGATGCAGATGACTTTAACAAAGTATTAGAAAATGACAAGGGGAATGAGGTTGTTAGAAGCATACGGGTGCACGTGTCAACAATGAGGTTAAGCTCTCAGATATTTACTAAAATGAGCAAACTACAATTTCTAGATTTTTATAGTGCCTATACGATTCCATACCATGACGTTCTTCCTAAAGGACTTCAATCATTTCCAACTGAACTAAGATATCTTCGTTGGTGGCATTACCCTTTGAAATCCTTGCCAAAGAAATTTTGTGCAGAGAAACTTGTTGTGTTGGACTTGTCACATAGCAGAGTGAAAAGACTTTGGCACGGTGTCCAGAACCTGGTTAATTTAAAGCAAGTTAACCTATCTGGTTGTATGTCCCTGAAGGAGCTGCCAGACTTTTCAAAAGCCACAGATCTTGAAGTGCTTGATGCAAGTTGTTGTATGAAGTTAACTGCTGTGAAATCATCCGTGTTTTCTCTTGCCAAGCTTGAGAAATTGGATCTTAGTTTCTGCTGGTCCCTCACCAGCCTTACAAGCAATGCTCAATTAAGCTGCCTCAGTCATCTCAACCTAGAAGGGTGCCGTCATCTAACAAAATTCTCAGTGACATCAGAGAATATGGTAGAACTAAATCTAAAAAGTACCAGAATCAAAGCATTGCCCACATCATTTGGATGTCAAAGAAAGCTTGAAACTCTATATTTAGATAAAACTAGAATTAAGAGCTTACCATCATGCATGGTGAATCTCACAAGACTACGATATCTGACCCTAAGAGATTGTGAGAAGCTTCAAACAATTCCAGAGCTTCCACCGTCCCTTGAAACTCTACTTATCGACGACTGCAGCTCATTGAAGACAGTGTCGTTCCCTTCAACAGCTGCTAAACAATTCCAGGAGAACAGGAAAAGGGTAGAGCTCTTTTATTTTGAGAGGTTGGATGAAGATTCTCTGATGGCTATTGGGTTGAATGCGCAAATCAATGTGATGAAATTTGCCCAGCAACATCTATCTGCATTGAAGCTTGATTTTGTTGAAAACTATGATGATTACTCTCGTAATTATGATTCTTATCAGGCTGTGCATGCATTTCCAGGAAGCAGAGTACCAGAGTGGTTGGAATATAAGACAATGGGAGATTCAGTAATTATTGATCTCTCTTGTCCTCCAACATCCCCTCTGTTTGGCTTCATTTTCTGCTTCGTCAATGATAAGTGGCCAAAGTATGATGAGTGGCTAAAGTATGATGAGTTTCCAAACTATTATAAAAAATTCAAATTGAAATTCACTATTAGTGCTGGGGAAGATGATGCTGGTGAAGATAAAAAGGACAGCATTGAAGTTAACATGTATTTAAACTCAATGTACACTAGAGGAGATCATGTGTGTGTGATGTACGACCAAAGATGCTCTCGCTACTTAAGTAGAAGATCACAAAATCTGTCAAGGTTCCAAATCAAGGTTACACCATGGTGGCTTCCCGATTTTCTTAATGAAGAGTCAGAAGAGAGGATGGAATTAAAAGGGTTTGGGGTGAGCCTAATAAGCACCTTCAAATATGACAGCTTCGTTCGACAAATGAAATTGCGTGATTCTGGTGGATGCAACAGGATATTTTAA 3282 0.3863 MVYFFFFWSFLLVLFSFVTRLLLKRKGVAVVSDNAPQTNWYDAVDTQQEEKYDVFVSFRGEDIRDGFLSHLAVAFHQKKINAFVDDKLQRGEEIWPSLVGAIEGSLISVIIFSENYASSTWCLKELIKILECRDKYGHTLIPIFYGVDPTDVRHQTRSYVSAFAEHRKKFDPTMVQIWRDALNKSANLSGIKSLDFGNEAELLEKIINEVLHQLRRLSKHTPNSNGLVGIGKSIADIEALLLKDSKDVRKIGIWGMGGIGKTTIAEQVFSKICSQYKGTCFLSNVREESTKHGIIYLKEKLFSTLLAEDVKIKSPNGLSDDIRRRIIRMKVLIVLDDVNDSDQLDRLELYGTVDKFGRGTRIIVTTRDQQVLIANKVDDIHHVGELTSSESLELFNSISFNQSHLETQFHETSKKLVDYAKGIPLVLKVLGKLLHGKGDEVWESQLNKLKQMPSPEVYDVLRLSYDDLDRKEQRIFLDLACFFKGLDFKVELLKTLLKDCESDNSVAHGLERLKDKTLIVISEDGVVSMHDLMEEIAWEIVRQESKDDIGSQSRLGDADDFNKVLENDKGNEVVRSIRVHVSTMRLSSQIFTKMSKLQFLDFYSAYTIPYHDVLPKGLQSFPTELRYLRWWHYPLKSLPKKFCAEKLVVLDLSHSRVKRLWHGVQNLVNLKQVNLSGCMSLKELPDFSKATDLEVLDASCCMKLTAVKSSVFSLAKLEKLDLSFCWSLTSLTSNAQLSCLSHLNLEGCRHLTKFSVTSENMVELNLKSTRIKALPTSFGCQRKLETLYLDKTRIKSLPSCMVNLTRLRYLTLRDCEKLQTIPELPPSLETLLIDDCSSLKTVSFPSTAAKQFQENRKRVELFYFERLDEDSLMAIGLNAQINVMKFAQQHLSALKLDFVENYDDYSRNYDSYQAVHAFPGSRVPEWLEYKTMGDSVIIDLSCPPTSPLFGFIFCFVNDKWPKYDEWLKYDEFPNYYKKFKLKFTISAGEDDAGEDKKDSIEVNMYLNSMYTRGDHVCVMYDQRCSRYLSRRSQNLSRFQIKVTPWWLPDFLNEESEERMELKGFGVSLISTFKYDSFVRQMKLRDSGGCNRIF* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3422 1093 PRINTS Disease resistance protein signature 420 434 - -
Lja3g3422 1093 PRINTS Disease resistance protein signature 325 339 - -
Lja3g3422 1093 PRINTS Disease resistance protein signature 250 265 - -
Lja3g3422 1093 PRINTS Disease resistance protein signature 712 728 - -
Lja3g3422 1093 ProSitePatterns EF-hand calcium-binding domain. 337 349 IPR018247 -
Lja3g3422 1093 SMART till_3 51 188 IPR000157 GO:0007165
Lja3g3422 1093 Pfam TIR domain 51 230 IPR000157 GO:0007165
Lja3g3422 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 479 IPR027417 -
Lja3g3422 1093 Pfam NB-ARC domain 238 452 IPR002182 GO:0043531
Lja3g3422 1093 Gene3D Ribonuclease Inhibitor 580 726 IPR032675 -
Lja3g3422 1093 Gene3D - 49 211 IPR035897 -
Lja3g3422 1093 SUPERFAMILY L domain-like 581 843 - -
Lja3g3422 1093 SUPERFAMILY "Winged helix" DNA-binding domain 456 545 IPR036390 -
Lja3g3422 1093 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1086 IPR044974 GO:0006952
Lja3g3422 1093 Gene3D Ribonuclease Inhibitor 733 860 IPR032675 -
Lja3g3422 1093 Gene3D - 212 380 IPR027417 -
Lja3g3422 1093 ProSiteProfiles TIR domain profile. 50 214 IPR000157 GO:0007165
Lja3g3422 1093 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 190 IPR035897 -
Lja3g3422 1093 Gene3D - 385 469 IPR042197 -
Lja3g3422 1093 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 47 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3422 Lja-Chr3 67554552 67564996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3422 52 847 WRKY Transcription Factor Family AT4G12020 31.813 1.25e-94 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3422 - - lja:Lj0g3v0259009.2 1608.58