LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3421	ATGATTTCAATTTTATATTTCATTCCAATCCTTTCCTTTCAAATTTCCAATGTATTATCTGAATATTGTGAGGATATCCATTTATGTTTGAATTCACGTGAAGTTCTTATTTTTCAGGCCGGGCCATCTCAATATAGAGGTAGGGGTGGCAGGGGTGGTAGACCATTTAGACGGGGTGGCCGTGGTCGTGGTCGAGGCCAGTTCAATCATGGTAGGGGACATGGGGTGGGTGGTGGTGGACACTTTCCATCCCATACTTCAGGACCTGCTATTTCTGATGTGCCAGGTGCACCTGCTGCTGCTGGAGCAACCTCATCAATCTCTGGGCAAATGACAATACCTAATTCAGCTGAAGTGCCAGCTGCATCTGCTCAACCTCTATCACGTAAGATGTATTGTGAAGTTTGTAAGGCTGAGTGCAACAGTCCAGAAATCATGGAACAACATAAGAATGGAAAGAGACATAAGAAGAATATGAAAATACATGAAGAATTACAGAGACGCAATAATTTAAATGGACAACAGAGTGGACAGATTCCTACATCTCAAGTGAATTTGGCAGATCATCCTCAGAAAGTTCAGAACTCTGAGAAAAAGGAATGCCCCACAGAAAATATGGGCTCTGAAATTACAGCTGATTATGACAAGAATGAAATTAAGTTGCAGAATAATGTAGGAGAGACTTCTGAAGTTCCAGCTGAAGGGCCTGAGGGGAACACCACGGATAACTCTGCTCTAGGAGACCGTGGATTGAAGCGTAAAATGAGAGGAGGAAAAGTACGTAGAAACGCGAAGAAGACTACAGCACAACTTTCAGAAGCTGAGCAACCTACAACTTTTATTTGTGAACTCTGCAATGCTAAATGTGAGTCCCCTGCTGTTTATAATAGTCATATGGCTGGGAAAAAGCACTTAGCAAATCTGAAGCGAGCAAATGGTTCCCAAGCTTTGCCTGGAGCAGGTAAACAAACTTCATCCACAGTAGTTCATCAACCTTTGCCTGGAGTATCAGGTCTTCAAGCACTATACCCATCCGACGTCAACGCTCTGGCGAATGCAATTAATACTCAAGTCCAACAAGGTGATAATGATCCACAGATACTTTTGGCTCAGCTTCTGATGACTGTGATATCTCAAGGACAAGGGCAAGCACCAGCAATTCCACCCACAGGACCTTTGGCTGGTCAGATACCAGAGCCCTCATCAGTGCCCGGATTAAGTCATGAACAACAATTGGCACAGACACAAGTGTCAGACATAACAGCACATGTTGAGATGGAAAATCCTGCTGGGGAAACAAATAATGAACTGTTATCTGAACAACAATTGGCACAGACACAAGTGTCGGACATAACAGCACATGTTGAGATGGAAAATCCTGCTGGGGAAACAAATAGTGAACTGTTATCTGTCTCAACAGAGTTTAATGCACTGGCAGGTTCAAGCGTTACCCAAATAGAAGGTGGAAGTTCTGAAACTAAGCCGTCCCAAGTATAG	1497	0.4349	MISILYFIPILSFQISNVLSEYCEDIHLCLNSREVLIFQAGPSQYRGRGGRGGRPFRRGGRGRGRGQFNHGRGHGVGGGGHFPSHTSGPAISDVPGAPAAAGATSSISGQMTIPNSAEVPAASAQPLSRKMYCEVCKAECNSPEIMEQHKNGKRHKKNMKIHEELQRRNNLNGQQSGQIPTSQVNLADHPQKVQNSEKKECPTENMGSEITADYDKNEIKLQNNVGETSEVPAEGPEGNTTDNSALGDRGLKRKMRGGKVRRNAKKTTAQLSEAEQPTTFICELCNAKCESPAVYNSHMAGKKHLANLKRANGSQALPGAGKQTSSTVVHQPLPGVSGLQALYPSDVNALANAINTQVQQGDNDPQILLAQLLMTVISQGQGQAPAIPPTGPLAGQIPEPSSVPGLSHEQQLAQTQVSDITAHVEMENPAGETNNELLSEQQLAQTQVSDITAHVEMENPAGETNSELLSVSTEFNALAGSSVTQIEGGSSETKPSQV*	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3421	498	Gene3D	Classic Zinc Finger	261	311	-	-
	Lja3g3421	498	Gene3D	Classic Zinc Finger	116	164	-	-
	Lja3g3421	498	SUPERFAMILY	beta-beta-alpha zinc fingers	121	163	IPR036236	-
	Lja3g3421	498	MobiDBLite	consensus disorder prediction	46	105	-	-
	Lja3g3421	498	MobiDBLite	consensus disorder prediction	382	415	-	-
	Lja3g3421	498	PANTHER	GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE	39	435	-	-
	Lja3g3421	498	SUPERFAMILY	beta-beta-alpha zinc fingers	275	311	IPR036236	-
	Lja3g3421	498	MobiDBLite	consensus disorder prediction	227	246	-	-
	Lja3g3421	498	SMART	ZnF_U1_5	277	311	IPR003604	GO:0003676\|GO:0008270
	Lja3g3421	498	SMART	ZnF_U1_5	128	162	IPR003604	GO:0003676\|GO:0008270
	Lja3g3421	498	SMART	c2h2final6	131	155	IPR013087	-
	Lja3g3421	498	SMART	c2h2final6	280	304	IPR013087	-
	Lja3g3421	498	PANTHER	OS06G0651300 PROTEIN-RELATED	39	435	-	-
	Lja3g3421	498	MobiDBLite	consensus disorder prediction	227	250	-	-
	Lja3g3421	498	Pfam	Zinc-finger of C2H2 type	280	304	-	-
	Lja3g3421	498	Pfam	Zinc-finger of C2H2 type	132	155	-	-
	Lja3g3421	498	MobiDBLite	consensus disorder prediction	51	68	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3421	Lja-Chr3	67545869	67547365	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3421	130	322	C2H2 Transcription Factor Family	AT5G61190	24.352	1.47e-07	52.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3421	-		-	lja:Lj0g3v0199689.2	839.721