Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3418 ATGATGATTGAGAAACACAGGTGCAAACTCTGCTTCAGAACCTTCTCTAATGGCAGAGCATTGGGTGGTCACATGAGGTCTCACATGATGCACCTACCGCTTCCACCAAAACCGAACGAGTCACCACCACCGGCGACGATTCAACTCAGCTTTGAGGCCGAGTCAGCTTCATCTCCTTCTTCCTCCTTTGAAGAAAACAACAACAAGGGATCACTCTCGTATGTGTTGAGAGAGAAGCCGAAGCGGAATTTCCGGTTCTCGGATCCTGAGTTTTTCGATGCTGGGTCGGTGATCCTCCATCATGACAGGGAAAGTGAGAGCGAGTCGTCCAGGAATCTGACTCGGAAACGATCCAAGCGGACTCGGATCGAATCGACTAGTTCGGCTTCGAACACCACCACGGAGGAGGATGTGGCGTTTTGTCTCATGATGCTGTCTCGTGATAAGTGGAAGAGAAAACATCATGAGCTAGTTCATGATGATGAAGATGAAGAAGACGATGAAGATGAAGAAGAAGAAGAAGAAGAGGAAGAAGATGAAGATAGTGATGATGGCGATGAATCCGAGGAGGAAGAAGAGGTGAAGGTGACTACGAAGAAGGTGAGAGGAAGGTACAAATGCGAAACGTGTGACAAGACGTTTCGGTCGTACCAGGCATTGGGTGGACACAGAGCGAGTCACAAGAAGATCAAGGTAGTGAAAGAAGAAGATCATGAAATTGAGAACAAGAATTTGGTGGTGGAGAAGAAGATTCACCAGTGTCCGGTTTGTTTTCGGATTTTTGGGTCGGGTCAGGCGCTGGGTGGGCACAAGAGAACCCATGTTACCGGGTCAGCGGCGGTGGTGACGGCGGCAGAGGTCAGGGTGGTTCCGGTTCTGAGTTCCCCGAAGTTTGGTGACAGTTTGATAGATCTCAACCTCCCTGCTCCGTTGGATGAGGATGATGTTAGCCAGATCGACGACTCTGCGGTTTACTATTGA 981 0.4944 MMIEKHRCKLCFRTFSNGRALGGHMRSHMMHLPLPPKPNESPPPATIQLSFEAESASSPSSSFEENNNKGSLSYVLREKPKRNFRFSDPEFFDAGSVILHHDRESESESSRNLTRKRSKRTRIESTSSASNTTTEEDVAFCLMMLSRDKWKRKHHELVHDDEDEEDDEDEEEEEEEEEDEDSDDGDESEEEEEVKVTTKKVRGRYKCETCDKTFRSYQALGGHRASHKKIKVVKEEDHEIENKNLVVEKKIHQCPVCFRIFGSGQALGGHKRTHVTGSAAVVTAAEVRVVPVLSSPKFGDSLIDLNLPAPLDEDDVSQIDDSAVYY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3418 326 Pfam C2H2-type zinc finger 204 229 - -
Lja3g3418 326 Pfam C2H2-type zinc finger 6 29 - -
Lja3g3418 326 Pfam C2H2-type zinc finger 252 274 - -
Lja3g3418 326 Coils Coil 158 178 - -
Lja3g3418 326 Gene3D Classic Zinc Finger 202 274 - -
Lja3g3418 326 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 124 318 IPR044303 GO:0006355
Lja3g3418 326 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 2 122 - -
Lja3g3418 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Lja3g3418 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Lja3g3418 326 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Lja3g3418 326 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lja3g3418 326 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Lja3g3418 326 SMART c2h2final6 6 28 IPR013087 -
Lja3g3418 326 SMART c2h2final6 205 227 IPR013087 -
Lja3g3418 326 SMART c2h2final6 252 274 IPR013087 -
Lja3g3418 326 MobiDBLite consensus disorder prediction 161 191 - -
Lja3g3418 326 MobiDBLite consensus disorder prediction 102 133 - -
Lja3g3418 326 MobiDBLite consensus disorder prediction 27 46 - -
Lja3g3418 326 MobiDBLite consensus disorder prediction 102 123 - -
Lja3g3418 326 MobiDBLite consensus disorder prediction 156 198 - -
Lja3g3418 326 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 124 318 - -
Lja3g3418 326 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 122 IPR044303 GO:0006355
Lja3g3418 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lja3g3418 326 SUPERFAMILY beta-beta-alpha zinc fingers 204 274 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3418 Lja-Chr3 67517685 67519394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3418 3 319 C2H2 Transcription Factor Family AT3G60580 42.651 3.21e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3418 zf-C2H2_6 9.6e-12 CL0361