Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3417 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACACTTTTGTAAAATTTGCAAAAAAGGATTTGGTTGTGGAAGAGCTCTAGGAGGACACATGAGGGCGCATGGAATAGGCGATGAAGCGGTGCACATGGACGATGATGACCCTGCGAGCGATTGGGAAGGCGGTGGTGGTGGCAACAACGTGCCACCGAGCAACAAACGCATGTATGCTCTGAGAACAAATCCAAACCGGCTTAAGAGCTGCAGGGCATGCGAGAATTGTGGCAAGGAGTTCTTGTCTTGGAAGTCTTTCCTCGAACACGGGAAATGCACTTCCGAAGATGCGGAGTCTCTCGTTTCCTCTCCGGGGTCAGATGCTGCCGCCGATGATGACGGTGGCCGGAGAGGTTGCGGCTGGTCAAAGAGAAAAAGGTCGTTAAGAACAAAAGTGGGAAGCTTCAATTACAATTGTCCTTCAAGCGAGGAAGAAGACTTGGCCAATTGTTTGATGATGTTATCCAATGCCATTGTGGATCCTCTCGTGGCAGAGCCTGAGGAATCATGTGCATCGGCTAGCCGGGATGAAGAACGAAGAAACCCCATGAATTTCATTGCTCCTTTGTCATATAGAGTCCCTGATAAGGCCAAAGGTGTTGCCAAGAGCGGTTTGTTTGAATGCAAAGCGTGCAAGAAAGTTTTCAACTCGCACCAAGCATTGGGCGGGCATAGAGCGAGTCATAAAAAGGTAAAAGGTTGCTTCGCTGCAAGACTAGATAACAACCTCGATGATGGCTTTGCTGGAGCCGAGGATGACCTCTTCATGCAGGAAGAGCTTTACCTTGCAAAATCAAATTCCACTCTTCAATTTGATCATGGCACCACCAACAACAACCCCACATTATTGGCTTCTTCTTCTTCCAAGAAAAAATCCAAAGTGCACGAATGTTCAATTTGTCACAGGAGTTTCTCTTCAGGGCAAGCCTTGGGAGGACACAAAAGGTGTCATTGGATCACATCAAACGCACCAGACACATCTACACTGGCTAGATTTCAACAATTTCAAGAACATTTGGATCAAGTGCCAAAATTTGATCCCTCTTCTGAGCCAATTGATCTCAAGCTAGATCTCAATCTTCCTGCTCCAACAACAAATGATCTTGCTAGAAGGAATGTTTCTACAGAATTTTACTTGCAGCCATGGGTTGCTACAAAAGATGACAATATTAATAGTCCATGTCAGAGTCATCACCAACACCTTAATAACCAAGTTGATAATGAAATTAATAATGAGGACAAAAATAATAACACCTGCAACAACACAAATGTTGATAATAATGAAGCTGATAATAAGGTCAAGTTAGCTAAATTGAGTGAACTAAAGGATATTAACATTGGTAGCAGTTCTTCGCCATGGTTGCAAGTTGGAATTGGTTCAACAACTGATGTGAGGATTGATGCCTAA 1443 0.4401 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDEAVHMDDDDPASDWEGGGGGNNVPPSNKRMYALRTNPNRLKSCRACENCGKEFLSWKSFLEHGKCTSEDAESLVSSPGSDAAADDDGGRRGCGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASRDEERRNPMNFIAPLSYRVPDKAKGVAKSGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNNLDDGFAGAEDDLFMQEELYLAKSNSTLQFDHGTTNNNPTLLASSSSKKKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQEHLDQVPKFDPSSEPIDLKLDLNLPAPTTNDLARRNVSTEFYLQPWVATKDDNINSPCQSHHQHLNNQVDNEINNEDKNNNTCNNTNVDNNEADNKVKLAKLSELKDINIGSSSSPWLQVGIGSTTDVRIDA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3417 480 MobiDBLite consensus disorder prediction 44 65 - -
Lja3g3417 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 245 IPR013087 -
Lja3g3417 480 Gene3D Classic Zinc Finger 11 104 - -
Lja3g3417 480 PANTHER OS02G0659100 PROTEIN 1 477 - -
Lja3g3417 480 PANTHER OS02G0659100 PROTEIN 1 477 - -
Lja3g3417 480 SUPERFAMILY beta-beta-alpha zinc fingers 217 329 IPR036236 -
Lja3g3417 480 Gene3D Classic Zinc Finger 216 329 - -
Lja3g3417 480 ProSitePatterns Zinc finger C2H2 type domain signature. 309 329 IPR013087 -
Lja3g3417 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 307 329 IPR013087 -
Lja3g3417 480 ProSitePatterns Zinc finger C2H2 type domain signature. 220 240 IPR013087 -
Lja3g3417 480 SMART c2h2final6 307 329 IPR013087 -
Lja3g3417 480 SMART c2h2final6 218 240 IPR013087 -
Lja3g3417 480 SMART c2h2final6 13 35 IPR013087 -
Lja3g3417 480 MobiDBLite consensus disorder prediction 109 129 - -
Lja3g3417 480 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Lja3g3417 480 Pfam C2H2-type zinc finger 218 242 - -
Lja3g3417 480 Pfam C2H2-type zinc finger 306 331 - -
Lja3g3417 480 Pfam C2H2-type zinc finger 13 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3417 Lja-Chr3 67490123 67491565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3417 118 372 C2H2 Transcription Factor Family AT1G02040 36.822 1.77e-33 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3417 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3417 - - gmx:100793846 731.865