Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3405 ATGGATTCAAATGAGCGTAAAAAAGCAGCTATGCAGCGAAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTATGAACAAGGCCTCAATTATTGTGGATGCTACCAGATACATAGAGGAGTTGAAGCAAAAAGAGGAGGGATTGAACTCAGAGATTGAAGCAGCTGAATCATCAATCTCCCAAGATGAACTACCTAAGGTCACTGTAGAAACCCTAGAAAAGGGTTTCCTCATTAATGTGTTTTCAGAGAGGAATTGCCCTGGGATGCTTGTGGCAATACTGGACGCCTTTGAAGAACTGGGTCTTGATGTGCTCGATGCTAGGGTTTCCTGTGAAGACACTTTCCAACTGGAAGCTGTTGGAGGAGAAAGCGAAGAAAATGACAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTTCAGGCAATCAACAGCATGGATTAA 450 0.4467 MDSNERKKAAMQRKLQQLRSVTNSSAMNKASIIVDATRYIEELKQKEEGLNSEIEAAESSISQDELPKVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESEENDSIDAQVVKQAVLQAINSMD* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3405 149 CDD ACT_UUR-ACR-like 89 145 - -
Lja3g3405 149 Coils Coil 1 21 - -
Lja3g3405 149 Gene3D - 3 59 IPR036638 GO:0046983
Lja3g3405 149 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 61 IPR036638 GO:0046983
Lja3g3405 149 MobiDBLite consensus disorder prediction 1 22 - -
Lja3g3405 149 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 148 - -
Lja3g3405 149 ProSiteProfiles ACT domain profile. 80 149 IPR002912 -
Lja3g3405 149 Coils Coil 33 60 - -
Lja3g3405 149 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3405 Lja-Chr3 67133749 67135694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3405 3 62 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 40.984 2.78e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3405 - - gmx:100499821 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3405 3 67133749 67135694 Lja1g3290 1 40820768 40821867 ECH
Lja3g3405 3 67133749 67135694 Lja3g3405 3 67133749 67135694 ECH
Lja3g3405 3 67133749 67135694 Lja6g1005 6 22577725 22579158 ECH