Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3401 ATGAATTCAAGGATAAGTGTTGGAGATGGTTTCCGTGTTAGTGCATCAAGTACACCGAGTAATTCAAGCGGAGGATCTGAACCAGATGACATAGAGTCATTAGGTGATGTCTACATATGGGGAGAGATTATGGCAAATGGGGTTTCACCTGATAAGATTGGAACTCAGGTCCCTTCTAAGATAGATGTGTTGATTCCTAAAATCTTAGAGTCAAATGCAATTATTGATGTTAATCAAATTGCATCTGGTACACACCACCATGCAATAGTTACCAGGCAAGGTGATGTTTTTACTTGGGGTGAAGAATCTGGGGGAAGACTTGGTCATGGAATTGATAGAAGTTTTGGCCAACCTCATTTGGTTGATTTTCTTATTTCTAAATTTGATTTTGTTGCGTGTGGAGAGTATCATACATGTGCTATATCTAAATTTGATGATCTATTCACATGGGGAGATGGTGCACATAATGTTGGACTTCTTGGCCATGGTACCGAGGCTAGCCATTGGATACCAAAAAGGGTTGATGGCCCTCTAGAAGGAATTCAAGTTGTATCTGTTGCTTGCGGCACATGGCATACGGCATTGGCAACCTCGAATGGAAAATTGTTTACCTTCGGTGATGGAGCATTTGGTGTCTTGGGCCATGGAGATAAAGAGAGTGTTTTGTATCCAAAGGAGGTACAATTATTAAACGGACTAAAGACTATTAAGGTTGCATGTGGAGCATGGCATACTGCTGCTATTATAGAGGTTATGTTTCAGTCTGCGGGTTCAAAAGCATCTTCATGGAAACTCTTCACATGGGGTGATGGAGACAAGTATCGCTTGGGTCATGGAAACAAGGAAACATACCTGCAACCAACTCGCGTCTCTTCTCTTATTGAATATAATTTCCACCAGATAGCATGTGGGCACACTATGACTGTTGCTCTCACTACATCTGGTCATGTCTTTACAATGGGAGGCACTGAAAATGGTCAATTAGGAAATCCTGCGGCGGCTGGAAAAGTACCTACTCTAGTTCAAGATAAGTTGCTTGGTGAGTTTGTTGAGGAAATATCATGTGGAGCACATCATGTTGTTGTCTTGACTTCAAAAAGTGAGCTATACACTTGGGGAAATGGTGCCAATGGAAGACTGGGACATGGTGACACAGAAGATAGGAAGTCTCCTTCACTGGTGGTAGCCTTGAAAGATAGGCATATAAAAAGTATCTCATGTGGCTCAAATTGTACATCTTGTATATGCAAACACAAATGGGTCTCTGCAAATGATCAACCTGTTTGCTCTAATTGTCGACAAGCATTTGGCTTAACAAGAAAACGACACAATTGTAATAATTGTGGGTTGGCTTACTGCCATGCTTGTAGTTCGAAAAAAGCATTCAAAGCAAAATTTGCTCCTAGCCCAGAAAAGCCTCATCGCGTATGTGATAATTGTTATGCTAAGCTTAAAGTTGTTGAGGTTGGTGATGCATCCAAGTTTAATGGAAAAGTTACTTCTGATTGTTCTATACATGTCAGGGACAGATTAAGCCAGAGAGAAGTAAGGTCTACAAGAACTCTCTTGTCGCCCATCACTGAACCGGTGAAATATCTTGAGATAAAGAATAACAAGCCTGGAACAAATTATGGTTCTATTTCCTTTATCCGTGCTTCTCAAGTTCCTTCACATTTGAAATTGAATGATATTGCATTTCCAAGTTCATTGAGTTCTATTCAAAGTGTTTTCAAGCCTCCTACATCTCCCAGTCCATCACAAACTCCACCAACTGGTTCAAGTACCACATCATCATGTACAAGTAGACCAAGCCCTCAATGCTCAACTAGTCCAAGATTGTCTAGAAATATTTTAAATAGTTTGAGAAGGACAAATAATTGTTTGAATCAAGAAGTCTCAAATTTAAAATACCAAATTCAAAATTTGAAGAAAATAGATGGCATGAAAGATGTCGAAATTCAGAAGCTTCAGAGAAAGGCTACAGAAACTATTGCCTTAGCGGCTGTGGAATCTTCTAGTCATAGAGAAGTAAAAGAATTTATTGAATCTATTATAGATCAGTTAAAACCAATGACTGAGAAGCTACCACTTGAAGTTCCAGAAAGTGAAGATTTGAGAACCATGTACATTCAAGGTGAAGACTTTCTAAAAGATAATTCAAAATCGAAAACACCATCCTTGCTATCAATGTTGGAGTTCAAGCAACAAAATGCTCCTGAAAGACTTACTGCGGACAATGACTCTTCTAAACTGCAAGAGAACATACTAGAAGAAAACATTAATGTTGCAGGCGTTGAGCCTTGTCAAGATGGAGAAAAATACCTTGATGAAATTAATGGATCTGCATTAGAGTGTAAGAAACAAAATTCACATGATATACCTAATGCTAATGCTAATGCTACAGGAGTTGACCCTTGTCATGATGGAGGAAAATACATATATGAAATTAAAGGATCCACATTGGAGTATAAGCAACAAAATTCACAAGACATATCTACCTCGGATCATGGCACTTTAGAATCACGAGAACTCATAGTAGACGAAAATGTTAATGTTGCAGGAGTTGACCCTAGTCTCGAGGGAGGAAAATACCTTGATGAAATCAATGAATCCTCATCGGAGTATAAGAAACAAAATGCACATGATATACCTACCTCAGATAGCCGCACTTCAGAATCACAAGAACACATACTAGAAGAAAATGTTGATGCTGCAGAAGATGACCATTTTCAAGATGTAGATAATTTCTTTGAAGTAATTAATGGATCAAAGTTGGATTCTGTGCAACAAAAAGAACCTGATATACTAAGATCATATAGTGGTACTTATGAACCTCAAGAGCAGAGATTAGAAGAAAAGTTTAACACTACAAGAGCTCATCAATCTCACAATGGAAGATATGTTCTTCAAGGAAGTAATGCATCATCTGTATCTAGTCTTGAAGAGGAAATGTCGCCACAAAGCTCAGAAAACGGTTCAAATTCACTACAGTCTTCAAAATATGAGAGACAACAAGAAGCACAAATTATTGAAAAGTTCGAATCTGGTGTTTATGCGATAATCATGTTTCGCTCTGATGGTATCAAAATTTTTAAACGAGTTAAGTTCAGTAAGCGAAGGTTCACCCAAAATCAAGCAGAAGAGTGGTGGAAGCAGAACAAAGCTAGGGTTCTTAGGAAATATTGTCCAATACATCAAAAACGAACATATGAATCATCGAACATCACACCACATGCTAAAGAAACTATTGATTTATCGACTTCCAAAATTTAA 3273 0.3825 MNSRISVGDGFRVSASSTPSNSSGGSEPDDIESLGDVYIWGEIMANGVSPDKIGTQVPSKIDVLIPKILESNAIIDVNQIASGTHHHAIVTRQGDVFTWGEESGGRLGHGIDRSFGQPHLVDFLISKFDFVACGEYHTCAISKFDDLFTWGDGAHNVGLLGHGTEASHWIPKRVDGPLEGIQVVSVACGTWHTALATSNGKLFTFGDGAFGVLGHGDKESVLYPKEVQLLNGLKTIKVACGAWHTAAIIEVMFQSAGSKASSWKLFTWGDGDKYRLGHGNKETYLQPTRVSSLIEYNFHQIACGHTMTVALTTSGHVFTMGGTENGQLGNPAAAGKVPTLVQDKLLGEFVEEISCGAHHVVVLTSKSELYTWGNGANGRLGHGDTEDRKSPSLVVALKDRHIKSISCGSNCTSCICKHKWVSANDQPVCSNCRQAFGLTRKRHNCNNCGLAYCHACSSKKAFKAKFAPSPEKPHRVCDNCYAKLKVVEVGDASKFNGKVTSDCSIHVRDRLSQREVRSTRTLLSPITEPVKYLEIKNNKPGTNYGSISFIRASQVPSHLKLNDIAFPSSLSSIQSVFKPPTSPSPSQTPPTGSSTTSSCTSRPSPQCSTSPRLSRNILNSLRRTNNCLNQEVSNLKYQIQNLKKIDGMKDVEIQKLQRKATETIALAAVESSSHREVKEFIESIIDQLKPMTEKLPLEVPESEDLRTMYIQGEDFLKDNSKSKTPSLLSMLEFKQQNAPERLTADNDSSKLQENILEENINVAGVEPCQDGEKYLDEINGSALECKKQNSHDIPNANANATGVDPCHDGGKYIYEIKGSTLEYKQQNSQDISTSDHGTLESRELIVDENVNVAGVDPSLEGGKYLDEINESSSEYKKQNAHDIPTSDSRTSESQEHILEENVDAAEDDHFQDVDNFFEVINGSKLDSVQQKEPDILRSYSGTYEPQEQRLEEKFNTTRAHQSHNGRYVLQGSNASSVSSLEEEMSPQSSENGSNSLQSSKYERQQEAQIIEKFESGVYAIIMFRSDGIKIFKRVKFSKRRFTQNQAEEWWKQNKARVLRKYCPIHQKRTYESSNITPHAKETIDLSTSKI* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3401 1090 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 588 612 - -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 960 1000 - -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 954 1000 - -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 871 894 - -
Lja3g3401 1090 Gene3D - 259 431 IPR009091 -
Lja3g3401 1090 Gene3D - 14 258 IPR009091 -
Lja3g3401 1090 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 795 1068 - -
Lja3g3401 1090 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 798 - -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 1 28 - -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 367 418 IPR000408 -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 93 IPR000408 -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 575 612 - -
Lja3g3401 1090 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 238 248 IPR000408 -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 94 144 IPR000408 -
Lja3g3401 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 798 - -
Lja3g3401 1090 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Lja3g3401 1090 PRINTS Chromosome condensation regulator RCC1 signature 202 216 IPR000408 -
Lja3g3401 1090 PRINTS Chromosome condensation regulator RCC1 signature 186 202 IPR000408 -
Lja3g3401 1090 PRINTS Chromosome condensation regulator RCC1 signature 304 322 IPR000408 -
Lja3g3401 1090 PRINTS Chromosome condensation regulator RCC1 signature 96 112 IPR000408 -
Lja3g3401 1090 PRINTS Chromosome condensation regulator RCC1 signature 362 383 IPR000408 -
Lja3g3401 1090 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 795 1068 - -
Lja3g3401 1090 MobiDBLite consensus disorder prediction 1 30 - -
Lja3g3401 1090 Pfam Transcription factor regulating root and shoot growth via Pin3 1007 1061 IPR013591 -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 145 199 IPR000408 -
Lja3g3401 1090 Pfam FYVE zinc finger 419 484 IPR000306 GO:0046872
Lja3g3401 1090 SMART fyve_4 417 486 IPR000306 GO:0046872
Lja3g3401 1090 SUPERFAMILY RCC1/BLIP-II 34 420 IPR009091 -
Lja3g3401 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 314 363 IPR000408 -
Lja3g3401 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 199 248 IPR000408 -
Lja3g3401 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 265 311 IPR000408 -
Lja3g3401 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 94 141 IPR000408 -
Lja3g3401 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 368 415 IPR000408 -
Lja3g3401 1090 Pfam Regulator of chromosome condensation (RCC1) repeat 146 195 IPR000408 -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Lja3g3401 1090 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 423 485 IPR017455 -
Lja3g3401 1090 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 489 IPR013083 -
Lja3g3401 1090 Coils Coil 618 645 - -
Lja3g3401 1090 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 366 IPR000408 -
Lja3g3401 1090 SUPERFAMILY FYVE/PHD zinc finger 419 485 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3401 Lja-Chr3 67094048 67098747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3401 1004 1061 Major Intrinsic Protein MIP AT1G31880 41.379 1.12e-08 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3293 1 40884239 40891768 Lja3g3401 3 67094048 67098747 PCT