Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3399 ATGCTTCAGATTCGGCTTAGCAAGACTCCTGCCTCAGAAGGGTCAGCGGGGGTGAAGGTGTCACCTGCTGAGACTGTTACAGTTGCATGCCCTGACCATCTGGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGGGCAGCTACTGCTGCTTCCCTTGTCAAGACTTTGGGCCGAAGATCCCGCCGCCAGCTTGGCGAGCGAGTACATTTCTGTGTTCGCTGTGATTTCCCCATTGCTATTTATGGACGACTGAGCCCTTGTGAGCATGCTTTCTGCCTCGATTGTGCTAGAAGTGATTCACTGTGCTACCTGTGTGATGAACGAATCCAGAAGATTCAGACAATCAAAATGATGGAAGGGATCCTCATATGTGCAGCTCCTCATTGTCTCAAGTCTTTTATGAAGAGGGCTGAATTTGAATCTCATATCCAAGACAACCATGCTAACCTTCTCCGTTCAAATGCTGATAAAGAGGATGGAAATGAGTCAGAGGCTCAGAGCGTGAGGCAACCTACAGCTTCAGATTCCACCGCTCGAGGCCCCCAGAGGCCAGTTTTTTCTCCTGGTTCGAATTCCCAGCAACATGACCTGGAAGACAGAACTCGTCGTCAGCCACCAAGAGATCAAGCTCCTTCACGGCCAACTCTGCAGCAGCAAAAGCCACCATTTTTTGGTCAACAACATCACCCTTCAGATACCTTGTCTGGTTCTGTTGGAGGTATACAGCAAGGCTTTCATCAACAAAGTTTTGACATGCAGCAGCATCCCCCACAAGAACCTTCCCAGCAAGCAGATACCTCATTTCAGGAGTATCCAACAATGCACTCTGCACAACCTCCAAATATGCCCTCAATGGTTACTTCAAACCCAATGCTCAACCCGCCAGTGCCATTCGGTTACCCCCCTTACCCGCTGCCCGAACGGGCTCAACCATTTTATGCTGCTCCTTATGATATGCCTAGGCAGGACTCGACTTCTGATATCGGTGGGGACCAGAGTCAATTACCACCGGGTTTTCAAGGGAATTATGCCCAGCCCTGGCATGCGGGTGCGCCTTTCGAACAAGTTGCAGATCCAAGGGATGCCAAAGGTGTACTGGCATCACAGCCAATGCATCTTCCTCCACCACCCCCACCTCTACCTCACATGTCACATTTGAAACAGAACTACTATTCTGGTGAGCCTGGGCATGATGGTCAGGGTTATGGTGGGTGGCAGCATGATAGCCGTGACAGTTTTGGCAGCCAAGGCTAA 1257 0.5052 MLQIRLSKTPASEGSAGVKVSPAETVTVACPDHLVLADLPVAKGIGAATAASLVKTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGILICAAPHCLKSFMKRAEFESHIQDNHANLLRSNADKEDGNESEAQSVRQPTASDSTARGPQRPVFSPGSNSQQHDLEDRTRRQPPRDQAPSRPTLQQQKPPFFGQQHHPSDTLSGSVGGIQQGFHQQSFDMQQHPPQEPSQQADTSFQEYPTMHSAQPPNMPSMVTSNPMLNPPVPFGYPPYPLPERAQPFYAAPYDMPRQDSTSDIGGDQSQLPPGFQGNYAQPWHAGAPFEQVADPRDAKGVLASQPMHLPPPPPPLPHMSHLKQNYYSGEPGHDGQGYGGWQHDSRDSFGSQG* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3399 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 401 IPR040383 GO:0016567|GO:0061630
Lja3g3399 418 MobiDBLite consensus disorder prediction 359 418 - -
Lja3g3399 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 401 - -
Lja3g3399 418 MobiDBLite consensus disorder prediction 155 242 - -
Lja3g3399 418 MobiDBLite consensus disorder prediction 209 242 - -
Lja3g3399 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Lja3g3399 418 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Lja3g3399 418 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Lja3g3399 418 MobiDBLite consensus disorder prediction 166 195 - -
Lja3g3399 418 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3399 1 417 C2H2 Transcription Factor Family AT5G01160 44.470 3.79e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3399 K15685 - gmx:100803063 684.871