Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3392 ATGTCTTTCAGTTTCAGTAACCTCCTCTCTAACAACAATAACAATGATTATAACTTGACCATGGATCATGATGAAGATGATAAACAGAGAACTTCTCAAAACAATGATAACTTCAAGTCATTTGCACCTCCTTCACTATCCCTCTCTCCCTTTTCAACTACTTCTGATTTTCCACCTGGTTTCAGCCCATCTGAATTCTTCAATTCACCTATGTTTTCTTCTCCAAATATTCCTGCATCTTACACAACAACTGAGCCTTGTTCTGCCCAGAGCCAGAGCATGAACCAGATGAACAGTTCAACTGAGGAGGAGGAAAATAGAAACTACTCTGAACTCACTTTCCAAAACCAAACAAGACAAATGCCTCTCTTTCAATCTTCCACAAACATGTCCGAAATGGAGCCACTGAAGAAACAGGACACAATGACTTCCAATGAAACTGCAAAGCAAATAGAGTTTTCATTTGAGGAGACAGCAGTGAAATCTGAGAATCCATCCACTCAGAGCTTCTTCTCCTCAGAACTGACCACAATCAAACCTGAAGTTCAACCTAATTCAGGTCATTTTAACCCCAGTAATGCTTCTATGTCTATCAGAGAACAACAAAGGAGATCAGAAGATGGATACAAGTGGAGGAAATATGGAGAAAAACAAGTGAAAGGAAGCGAAAATCCAAGAAGTTATTACAAGTGCACGCACCCGAGTTGCACGATGAAGAAGAAAGTTGAGAAGTCTGTGGAGGGACACATCACTGAAATAGTATACAAGGGAACTCACAACCATCCTAAACCACAATCTACCAAAAGAACAAGTTCTCAATCTATTCTTCAAGCATCTGTATCCTGCAACAACTCAGGGATTTCTGAACTATCTATGGGAGAGGAAGACTTGGACCAAACATCACAACTTAGTTATTCTGGTGGGAATGATGATGACCTTGGACCAGATGCCAAAAGATGGAAGGGAGAGGATGAAAATGATGGCTATTCCTATTCCGCCCCTGGAAGCAGAACTGTTAAGGAACCAAGAGTTGTGGTTCAAACTACAAGTGAGATTGACATACTTGATGATGGCTATAGGTGGAGAAAATATGGGCAGAAAGTTGTTAAGGGAAACCCAAACCCAAGGAGCTACTACAAATGTGTGACCCCGGGTTGTGCAGTGAGAAAACATATAGAGCGAGCTGCGAATGACATGAAAGCTGTGATCACCACTTATGAAGGAAAACACAACCATGATGTGCCGGTAGGACGAGGAATCGCAAGCCATAACATCAATAGAACTTCTCTGAACAGCAACACCACCAATATAGCTACCCCGGCTCCTATAAGGCCCTCAGTGGTGACTAATTGTTCGAGCTCAGCAAGTTTTGCAAATTCACTTCATGATTCAAAGCTAGAAATGTCAGGAAATCAAGAATATTTTCATGTAAACAAGTTGTTTAACCCTGGAAGCTTTGGATACTCGGGATTGAACAGATCAATGGGTTCATACACCAATTCGGAACAATATTCAGATGCTACATACTCAGCTAACGATGACTCCTTGCTTCAGTCTTTTCTGTCAAAGAATTATTATTGA 1581 0.4099 MSFSFSNLLSNNNNNDYNLTMDHDEDDKQRTSQNNDNFKSFAPPSLSLSPFSTTSDFPPGFSPSEFFNSPMFSSPNIPASYTTTEPCSAQSQSMNQMNSSTEEEENRNYSELTFQNQTRQMPLFQSSTNMSEMEPLKKQDTMTSNETAKQIEFSFEETAVKSENPSTQSFFSSELTTIKPEVQPNSGHFNPSNASMSIREQQRRSEDGYKWRKYGEKQVKGSENPRSYYKCTHPSCTMKKKVEKSVEGHITEIVYKGTHNHPKPQSTKRTSSQSILQASVSCNNSGISELSMGEEDLDQTSQLSYSGGNDDDLGPDAKRWKGEDENDGYSYSAPGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVTPGCAVRKHIERAANDMKAVITTYEGKHNHDVPVGRGIASHNINRTSLNSNTTNIATPAPIRPSVVTNCSSSASFANSLHDSKLEMSGNQEYFHVNKLFNPGSFGYSGLNRSMGSYTNSEQYSDATYSANDDSLLQSFLSKNYY* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3392 526 MobiDBLite consensus disorder prediction 181 207 - -
Lja3g3392 526 SUPERFAMILY WRKY DNA-binding domain 202 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 MobiDBLite consensus disorder prediction 13 54 - -
Lja3g3392 526 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 19 522 IPR044810 GO:0003700
Lja3g3392 526 MobiDBLite consensus disorder prediction 181 199 - -
Lja3g3392 526 ProSiteProfiles WRKY domain profile. 206 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 MobiDBLite consensus disorder prediction 34 54 - -
Lja3g3392 526 MobiDBLite consensus disorder prediction 312 326 - -
Lja3g3392 526 MobiDBLite consensus disorder prediction 255 276 - -
Lja3g3392 526 MobiDBLite consensus disorder prediction 300 336 - -
Lja3g3392 526 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 19 522 - -
Lja3g3392 526 MobiDBLite consensus disorder prediction 19 33 - -
Lja3g3392 526 MobiDBLite consensus disorder prediction 260 276 - -
Lja3g3392 526 SMART WRKY_cls 205 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 SMART WRKY_cls 355 414 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 Pfam WRKY DNA -binding domain 356 412 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 Pfam WRKY DNA -binding domain 206 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 SUPERFAMILY WRKY DNA-binding domain 347 415 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 Gene3D WRKY domain 191 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 Gene3D WRKY domain 325 416 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja3g3392 526 ProSiteProfiles WRKY domain profile. 350 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3392 Lja-Chr3 66883677 66887417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3392 205 418 WRKY Transcription Factor Family AT5G07100 60.465 8.41e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja3g3392 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3392 K13424 - gmx:102666898 599.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3392 3 66883677 66887417 Lja3g3392 3 66883677 66887417 ECH
Lja1g3314 1 41203715 41207196 Lja3g3392 3 66883677 66887417 PCT