Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3388 ATGGGTATGATACATGATCAGGGTTTTGCTGGAGATAAAGACATGATCTTTTGCGGCGTGTTCGATGGCCATGGTCCTCAAGGACACAGGTTTTCACAATGCATACGCGACAATCTACCCTCCAAACTCTCTGCAGCTATCAAACTGCCACAACAAAATGCTGCAGACACAGGCAGTTATGATGAGGATAACCGGCACATGTCTTTTGCTTCATGGGAGGGAAAATTTCTGAGGTCCTTCAAGGAAATGGATGAAGACCTTGCTAGGAACATTGACCGCGATGGCTATTGCGGAGGTAGCACTGCTGTAACTGTAATTAAACAGTACTATAATTGCATTCCTTTACCCTCTATAATTTCAGGGAGATATCTGATAGTCGGCAATTTAGGTGACTCTCGCGCAGTTCTTTGCACAAGAGCGGATGACAACCATCTTATTCCGGTTCAACTTACTGTTGACTTGATCCCAGATATTCCAAGTGAAACTGTAAGAATACTTGATTGTGGAGGCAGAATATTTGCTACAGGAGAAGATCCAGGTTTAAACAGAATATGGATGCCTGAAGGTGATTGCCCTGGACTGGCTATGTCTAGAGCCTTTGGAGATTTTTGCCTGAAAGACTATGGCCTCTCCTCAGCTCCAGATGTGTCTTACAGAAAACTTAGCAAGAGGGATGAATTTGTGGTTTTGGCTTCTGATGGGATATGGCATGTTCTGACAAACAATGAAGTAATAAACATAGTTGCTTCAGCACCAACGAGGTCCATGGCAGCCAAATTGTTAGTACACCATGCCGTTCAGGCTTGGAGATATAAGTATCCTGGTTTCCATGTTGACGATTGTGCAGCAATATGCTTGTTCCTGAATGATCAGCATGTTTTAACCTCTTCCCAGTCCAGTGTGAGAGGATCTTGGAAGAAATTGCATTGA 930 0.4366 MGMIHDQGFAGDKDMIFCGVFDGHGPQGHRFSQCIRDNLPSKLSAAIKLPQQNAADTGSYDEDNRHMSFASWEGKFLRSFKEMDEDLARNIDRDGYCGGSTAVTVIKQYYNCIPLPSIISGRYLIVGNLGDSRAVLCTRADDNHLIPVQLTVDLIPDIPSETVRILDCGGRIFATGEDPGLNRIWMPEGDCPGLAMSRAFGDFCLKDYGLSSAPDVSYRKLSKRDEFVVLASDGIWHVLTNNEVINIVASAPTRSMAAKLLVHHAVQAWRYKYPGFHVDDCAAICLFLNDQHVLTSSQSSVRGSWKKLH* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3388 309 Pfam Protein phosphatase 2C 10 266 IPR001932 -
Lja3g3388 309 PANTHER PROTEIN PHOSPHATASE 2C 65-RELATED 3 302 - -
Lja3g3388 309 ProSiteProfiles PPM-type phosphatase domain profile. 1 288 IPR001932 -
Lja3g3388 309 SUPERFAMILY PP2C-like 11 290 IPR036457 -
Lja3g3388 309 Gene3D - 4 298 IPR036457 -
Lja3g3388 309 CDD PP2Cc 11 288 IPR001932 -
Lja3g3388 309 PANTHER ALPHABET, ISOFORM E-RELATED 3 302 - -
Lja3g3388 309 SMART PP2C_4 3 286 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3388 Lja-Chr3 66803536 66805189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3388 2 290 PP2C-type Phosphatase Gene Family AT1G16220 45.016 2.03e-93 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3388 - - gsj:114416615 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3388 3 66803536 66805189 Lja3g3388 3 66803536 66805189 ECH
Lja1g3323 1 41330821 41334237 Lja3g3388 3 66803536 66805189 PCT