Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3378 ATGGGAAACAATAGTTGGCATGTCAAACATTTCCAATCTGCAAATGGTGATGATAGAAGGAACAACTTGAGGAGGAAACATGAGGGAAGTTTCATATACTTGGCATTTTCTCTGTTTCTTCTGCTAGCTCTGGCTTCCACCATTCAACCTGTGTCAGGAAGTTTGTGGGATGGGGTGGTTGTTACTGAAGCTGATTTTCAATCTCTGAGGGCTATTAAGCATGAGCTGATTGATCCTAAAGGGGTGCTGAGAAGCTGGAATGACAGTGGTTTGGGTGCTTGTTCAGGTGGTTGGGCAGGGATCAAGTGTGTGAATGGGGAAGTTATAGCAATTCAGCTTCCATGGAGAGGGTTGGGTGGTCAAATCTCTGAGAAAATTGGGCAGCTTCAAGCTCTTAGGAAGCTCAGTCTCCATGACAATGCTATTTCTGGTCCTGTCCCTATGGCTCTTGGCTTTCTTCCTAATCTCAGAGGAGTGTACCTCTTCAATAACAAGCTTTCAGGTTCTATTCCTCATTCTCTTGGCAATTGCCCCATGCTTCAGTCTATTGATGTTAGCAACAATTCCCTCACTGGTAAAATTCCTAACAATTTAGCAAACTCCACTAGGATATACAGGATCAATTTGAGCTTTAATTCACTTTCTGGCTCCATTCCTACCAGTTTCTCCATGTCTCCTTCTCTGACTATTCTTGCTCTCCAACACAACAATCTCTCTGGTTCCATCCCAGATTCTTGGGTTGGAATAGGAAAGAAAGCTTCCCAGCTTCAAGTTTTGACCCTTGATCACAATGTCATTTCTGGAACTATCCCAGTTTCTCTTAGCAGGTTGTCTTTGCTTGAAAATGTTTCTTTGAGTCATAACCAGATTGCAGGATCTATTCCAAGTGAACTAGGTGCACTTTCCAGGCTACAAAATCTTGATCTCTCAAACAATGCCATCAATGGCAGCTTCCCTGCTAGCTTCTCTAACCTCTCTTCTCTTGTTTCATTGAATCTAGAGAAAAATCAACTTGAAAGCCATATCCCTGATGCTCTGGACAGGTTGCACAACCTTTCTGTGCTTAACCTGAAGAGCAATAAGTTCAATGGTCAAATCCCACCAACAATTGGAAACATATCAAGCATTAGGCAAATTGATTTCTCTGGAAATAAATTTGTTGGAGAAATTCCAGATTCCCTTGCCAAACTTGCAAATCTCAGTTCATTCAATGTTTCTTATAACAACCTCTCTGGTCCTGTCCCATCCTCACTTTCCAAAAGATTCAATGCTAGCTCATTTGCAGGGAATCTTGAGCTCTGTGGGTTCACCAGTTCAAAACCATGCCCTGCACCCTCTCCTCATATTCTTCCAGCTCAATCACCAGAGTCAACTTCTAAACCCCACCATCACAGAAAATTAAGTACCAAGGACATAATCCTCATAGTAGCAGGTATTCTCCTGTTGATTCTACTATTACTGTGCTGCTTGTTGCTGTGTTGTTTGATCAGGAAAAGAGCTGCTTCAAGCAGAAAGAGTGACAAGACTGCTAAGGCGACAGCATCTGCTAGGAGTGTTGACAAAAGTGCCCCAGGTGGTGGTGATGTGGAGTCAGGAGGTGAAGCTGGTGGGAAACTGGTTCACTTTGATGGGCCTTTTGTGTTCACTGCTGATGATCTTTTGTGTGCCACTGCTGAGATAATGGGAAAAAGTGCATTTGGAACTGCATACAAGGCAACACTAGAGGATGGGAACCAAGTTGCTGTGAAAAGGTTGAGGGAGAAGACCACTAAAGGGCAAAAAGAATTTGAAGCTGAGGTTGCTTCACTTGGCAAAATCAGACACCCAAATCTCTTGGCACTCAGAGCCTACTATCTTGGACCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGTCTAAAGGAAGTCTAGCATCATTCCTTCATGCTCGTGGGCCTGAAATTGTGATTGAATGGCCAACAAGGATGAAAATAGCAATTGGAGTCACTAATGGGCTGTGCTATCTCCATAGCCAAGAGAATATGGTACATGGGAATCTCACATCCAGCAATATACTATTGGATGAGGAGACAAACCCTCATATCACAGATTTTGGTCTTTCAAGGCTAATGACAACTTCAGCCAATAGCAACATCATAGCTACAGCAGGGAATCTTGGATACAATGCACCAGAGCTTTCAAAGACTAAGAAACCTAACACAAAGACTGATGTGTACAGCCTTGGTGTCATAATCTTGGAGCTTCTAACTGGTAAACCACCTGGGGAACCAACCAATGTCATGGACTTGCCTCAGTGGGTGGCATCAATTGTGAAAGAGGAGTGGACAAATGAAGTGTTTGATTTGGAGCTCATGAGGGATGCACCAGCCATTGGGGATGAGTTGCTTAATACATTGAAATTGGCTCTGCATTGTGTGGATCCATCTCCAGCTGCTAGGCCTGAAGTTAAGCAAGTTTTGCAGCAATTGGAGGAAATCAAACCAGAGTTGGTTCCAGAGGATGATGGAACTAAGGCCCAAACAACTGAATAG 2532 0.4336 MGNNSWHVKHFQSANGDDRRNNLRRKHEGSFIYLAFSLFLLLALASTIQPVSGSLWDGVVVTEADFQSLRAIKHELIDPKGVLRSWNDSGLGACSGGWAGIKCVNGEVIAIQLPWRGLGGQISEKIGQLQALRKLSLHDNAISGPVPMALGFLPNLRGVYLFNNKLSGSIPHSLGNCPMLQSIDVSNNSLTGKIPNNLANSTRIYRINLSFNSLSGSIPTSFSMSPSLTILALQHNNLSGSIPDSWVGIGKKASQLQVLTLDHNVISGTIPVSLSRLSLLENVSLSHNQIAGSIPSELGALSRLQNLDLSNNAINGSFPASFSNLSSLVSLNLEKNQLESHIPDALDRLHNLSVLNLKSNKFNGQIPPTIGNISSIRQIDFSGNKFVGEIPDSLAKLANLSSFNVSYNNLSGPVPSSLSKRFNASSFAGNLELCGFTSSKPCPAPSPHILPAQSPESTSKPHHHRKLSTKDIILIVAGILLLILLLLCCLLLCCLIRKRAASSRKSDKTAKATASARSVDKSAPGGGDVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAFGTAYKATLEDGNQVAVKRLREKTTKGQKEFEAEVASLGKIRHPNLLALRAYYLGPKGEKLLVFDYMSKGSLASFLHARGPEIVIEWPTRMKIAIGVTNGLCYLHSQENMVHGNLTSSNILLDEETNPHITDFGLSRLMTTSANSNIIATAGNLGYNAPELSKTKKPNTKTDVYSLGVIILELLTGKPPGEPTNVMDLPQWVASIVKEEWTNEVFDLELMRDAPAIGDELLNTLKLALHCVDPSPAARPEVKQVLQQLEEIKPELVPEDDGTKAQTTE* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3378 843 ProSiteProfiles Protein kinase domain profile. 555 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3378 843 Pfam Leucine rich repeat 302 362 IPR001611 GO:0005515
Lja3g3378 843 Pfam Leucine rich repeat 131 190 IPR001611 GO:0005515
Lja3g3378 843 Gene3D Transferase(Phosphotransferase) domain 1 633 839 - -
Lja3g3378 843 Gene3D Ribonuclease Inhibitor 318 444 IPR032675 -
Lja3g3378 843 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 11 829 - -
Lja3g3378 843 MobiDBLite consensus disorder prediction 506 531 - -
Lja3g3378 843 Gene3D Ribonuclease Inhibitor 249 317 IPR032675 -
Lja3g3378 843 Gene3D Phosphorylase Kinase; domain 1 561 632 - -
Lja3g3378 843 CDD STKc_IRAK 561 826 - -
Lja3g3378 843 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 11 829 - -
Lja3g3378 843 SUPERFAMILY L domain-like 102 436 - -
Lja3g3378 843 Gene3D Ribonuclease Inhibitor 61 248 IPR032675 -
Lja3g3378 843 SUPERFAMILY Protein kinase-like (PK-like) 559 828 IPR011009 -
Lja3g3378 843 SMART LRR_typ_2 129 152 IPR003591 -
Lja3g3378 843 SMART LRR_typ_2 277 300 IPR003591 -
Lja3g3378 843 SMART LRR_typ_2 349 373 IPR003591 -
Lja3g3378 843 SMART LRR_typ_2 153 177 IPR003591 -
Lja3g3378 843 SMART LRR_typ_2 325 348 IPR003591 -
Lja3g3378 843 SMART LRR_typ_2 301 324 IPR003591 -
Lja3g3378 843 Pfam Protein tyrosine and serine/threonine kinase 558 823 IPR001245 GO:0004672|GO:0006468
Lja3g3378 843 Pfam Leucine rich repeat N-terminal domain 64 103 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3378 Lja-Chr3 66557359 66560500 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3378 56 828 Receptor kinase-like Gene Family AT3G51740 70.270 0.0 1053
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja3g3378 PK_Tyr_Ser-Thr 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3378 - - gmx:100799290 1312.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3378 3 66557359 66560500 Lja3g3378 3 66557359 66560500 ECH