Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3376 ATGGTGTATTTCTTTGTCTTATGGTCATTTCTGTTAGTGTTGTTTTCCTTTGTCAGTCAGTTCCTTCTAAAAGGGAGGGGTATAGCAGCAGAGCCTGTATCAGACAATGCTCCTCAAACAAACAAGCATGATGTTTTAGACCCACCTCAAGAAGAGAAGTATGATGTTTTTGTTAGCTTCCGGGGCGAGGACATCCGTGACGGTTTTCTTAGCCATCTGGCTGATGCTTTTCGTCAAAAGAAAATAAACGCCTTCATGGATGATAAGCTTAAGAGAGGACAAGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATCATTGGTTTCAGTGATCATATTCTCTGAAAACTACGCTACTTCACGCTGGTGTTTGAATGAATTGGTGAAAATACTTGAGTGCAGAGACAAATATGTACACACTGTAATACCAGTTTTCTACTGCGTAGATCCCACAGATGTACGACATCAAACAGGGAGTTATAAAGCAGCATTTGCTGAGCATACAAAAGAAATCGATCCGACCATGGTGCAAACATGGAGAGATGCTTTGAATAAATCTGCTAATTTATCAGGAAATATTTCATCAGATTTTCGGAATGATGCTGAGCTGCTTGGAAAGATCATCAATGATGTGTTGCATCAAGTAAGGAGGTTGAGTAAGCCCACACTTAACTCAAAAGGATTTGTTGGAATTGGCAAATCAATTGCTGATATAGAAGTCTTGCTGCTGAAACAGTCAAAAGATGTCTGCATTATTGGAATTTGGGGTATGGGAGGTATCGGCAAGACAACTATTGCAGAACAAGTGTTCAATAAAATATGTTTTGAGTATGAAGGTACCTGTTTTTTGTCAAATGTAAGAGAAGAGTTAGAAAGACATGGAACAATTTATTTGAAAGAAAAACTTTTCTCCACACTACTAGGAGAAGATGTGAAAATAACGTCACCAAGTGGATTGTCTTATTATATTTGGAGAAGGATTAGTCGTATGAAGGTTCTCATTGTTCTTGATGATGTGAATGATTCAGATCAGCTGGAATTATTTGGAACTGTTGATAATTTTGGATCAGGTAGTAGAATAATTGTAACAACTCGAGATAAGCAATTGCTTATAGCTAAAGAAGTTGATGATATACACGAGGTTGGGGTATTGAGTTCTGGTGAAGCACTTGAGCTTTTCAATTTGATTGCCTTGAACCAAAGTCACCTTGAAATGGAGTATCATGAAACTTCAAAGAGGATTGTTGATTATGCCAAAGGCATTCCATTAGTTCTTAAAGTTTTGGGTCATCTTCTTCGTGGAAAAGATCAGAAAGTATGGGAAAGCCACCTAGATAAGCTTAAGGAAATGCCGAGTAAAAAAGTTTATGATGTGATGAAATTGAGTTATGATGATCTAGATCGCAAAGAGAAAACGGTTTTTCGGGATATTTCTTGTTTCTTCAATGGAATGAATATGAAAGTGGACTCCATAAAAGCTTTATTGAAAGATCGTGAAAGTGATAATTCAGTGGCTCATGCGTTAGAAAGGCTGAAAGATAAAGCTCTTATAATTGTCTCCAAGGATAATGTTGTATCTGTGCATGATATTATCAAAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTGATGGAAACATTGGAAACCAAAGTCGATTTGGGGACGTTGATGAAGTATTGGAAAATGACAAGGGGACGGATGCCATTAGAATTATGCGGATGAACTTGTCAAAAATTAAGAGCAGCAACCTGAAGTTTAGCTCCAACATGTTTTCTAGGATGAGAAAACTTCAATTTCTTGATTTTTACGGGGAACGTGAAGACTACCCTGATATTCTTCCTGAGGGACTTCAATCTTTACCCAATAAATTAAGATATCTTCGTTGGATGAATTACCCTCTGAAATCCTTGCCAGAAAAATTTTCTGCAGAAAAACTTGTTATGTTGGACATGACTTATAGCAATGTGGAGATACTTTGGGATGGAGTGCAGAATCTGGTGAATTTAAAACAAGTTAAACTCCGTTGTTGTGTATTCCTGAAGGAGCTGCCCGACTTTTCAAAGGCCACAAATCTTGAAGTGTTAATTGCCAGTTTTTGTTATGACTTGACTTGTGTGCATCCATTTATTTTCTCTCTGGGAAAGCTTGAGAAATTGGATCTTAGTCACTGCTCTTCCCTCACCAGCCTTACAAGTAATGCTCAACCAAGCTGCCTCAGTTATCTCAACCTAGAAGGGTGTAAAGATCTAACAGAGTTCTCAGTGACATCAGAGAATATGATAGAACTTAATCTGAGCGACACCGGAATCAAAGCATTGCCTTCATCATTTGGAAGTCAAAGAAAGCTTGAAATCCTTGATTTAGAACAAGGTAGAATTGAGAGCTTACCATCATGCATTGTGAATCTCACAAGACTACGATATCTAAACCTAAGTGATTGTGAGAAGCTTCAAACATTGCCAGAACTTCCCCCCTCCGTTGAAACTCTACTTACCCGTGGCTGCAGCTCTTTGAAGACAGTGTTGTTCCCTTCAACAGCTACTGAACAATCCCAGGAGAACAAGAAAAGGGAGCTGCCAGACTTTTCAAAAGCCACAAATCTTGAAGTGCTTGATGCAATTGGTTGTTTTAAGTTAACTGCTGTGAAATCATCCGTGTTTTCAGGAGCTTGCATGAGCTTGGAGAACAAGAAAAGGGTTGACTTCTTGAATTGCATGAGCTTGGATGAACGTTCTCTGATGGCTATTGGGTTGAATGCGCGAATCAACGTGATGAAATTTGCACACCAACATCTATCTGCATTGAAGCATGATTATGTTGAAAACTATGATGATTATGACCGTAATTATCATTCTCATCAGGCTGTGCATTTCTTTCCAGGAAGCAGAGTACCAGAGTGGTTGGAATATAAGACAACGGGGGATTCTGTAATTATTGATCTCTCTTCTCCTCCACCTGCCCATCTGTTTGGCTTCATTTTCTGCTTCATAATTGATGGGTCGGTGCCAACGCAGGGTAAAAAATTGAAATTCAAAGTCACTATTAGTGCTGGTGAAGATGATGCTGGTGAAGATGATAACAGCAGCGTTGAAGTTTACATGTCTATTGACACAAAGCCTGGTGATGGCGATCATGTGTGTGTGATATATGACCAAAGATGTTCTCGCTTCTTAAGCAGAAGATCACAAAATCTGTCAAGGTTTCAGATCAAGGTTACACCATGGCTTGACAATTTTGGTGATGGTGAACAGAGGTTAGAATCAAAGGGGTTTGGGGTGAGTCTAATAAGCACCTCCAAATATGACAGCTTCGTTCGACAAATGGAATTGCATGATTCAAGTGAATCTTCTCTGTGCATTAATCAAATGGAATAG 3378 0.3896 MVYFFVLWSFLLVLFSFVSQFLLKGRGIAAEPVSDNAPQTNKHDVLDPPQEEKYDVFVSFRGEDIRDGFLSHLADAFRQKKINAFMDDKLKRGQEIWPSLVGAIEGSLVSVIIFSENYATSRWCLNELVKILECRDKYVHTVIPVFYCVDPTDVRHQTGSYKAAFAEHTKEIDPTMVQTWRDALNKSANLSGNISSDFRNDAELLGKIINDVLHQVRRLSKPTLNSKGFVGIGKSIADIEVLLLKQSKDVCIIGIWGMGGIGKTTIAEQVFNKICFEYEGTCFLSNVREELERHGTIYLKEKLFSTLLGEDVKITSPSGLSYYIWRRISRMKVLIVLDDVNDSDQLELFGTVDNFGSGSRIIVTTRDKQLLIAKEVDDIHEVGVLSSGEALELFNLIALNQSHLEMEYHETSKRIVDYAKGIPLVLKVLGHLLRGKDQKVWESHLDKLKEMPSKKVYDVMKLSYDDLDRKEKTVFRDISCFFNGMNMKVDSIKALLKDRESDNSVAHALERLKDKALIIVSKDNVVSVHDIIKEMAWEIVRQESDGNIGNQSRFGDVDEVLENDKGTDAIRIMRMNLSKIKSSNLKFSSNMFSRMRKLQFLDFYGEREDYPDILPEGLQSLPNKLRYLRWMNYPLKSLPEKFSAEKLVMLDMTYSNVEILWDGVQNLVNLKQVKLRCCVFLKELPDFSKATNLEVLIASFCYDLTCVHPFIFSLGKLEKLDLSHCSSLTSLTSNAQPSCLSYLNLEGCKDLTEFSVTSENMIELNLSDTGIKALPSSFGSQRKLEILDLEQGRIESLPSCIVNLTRLRYLNLSDCEKLQTLPELPPSVETLLTRGCSSLKTVLFPSTATEQSQENKKRELPDFSKATNLEVLDAIGCFKLTAVKSSVFSGACMSLENKKRVDFLNCMSLDERSLMAIGLNARINVMKFAHQHLSALKHDYVENYDDYDRNYHSHQAVHFFPGSRVPEWLEYKTTGDSVIIDLSSPPPAHLFGFIFCFIIDGSVPTQGKKLKFKVTISAGEDDAGEDDNSSVEVYMSIDTKPGDGDHVCVIYDQRCSRFLSRRSQNLSRFQIKVTPWLDNFGDGEQRLESKGFGVSLISTSKYDSFVRQMELHDSSESSLCINQME* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3376 1125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 900 1114 IPR044974 GO:0006952
Lja3g3376 1125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 49 837 IPR044974 GO:0006952
Lja3g3376 1125 PRINTS Disease resistance protein signature 252 267 - -
Lja3g3376 1125 PRINTS Disease resistance protein signature 419 433 - -
Lja3g3376 1125 PRINTS Disease resistance protein signature 327 341 - -
Lja3g3376 1125 PRINTS Disease resistance protein signature 712 728 - -
Lja3g3376 1125 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 900 1114 - -
Lja3g3376 1125 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 49 837 - -
Lja3g3376 1125 SUPERFAMILY L domain-like 528 897 - -
Lja3g3376 1125 SUPERFAMILY Toll/Interleukin receptor TIR domain 50 192 IPR035897 -
Lja3g3376 1125 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 852 909 - -
Lja3g3376 1125 Pfam NB-ARC domain 242 465 IPR002182 GO:0043531
Lja3g3376 1125 Gene3D - 384 468 IPR042197 -
Lja3g3376 1125 Pfam TIR domain 53 222 IPR000157 GO:0007165
Lja3g3376 1125 Gene3D Ribonuclease Inhibitor 559 759 IPR032675 -
Lja3g3376 1125 ProSiteProfiles TIR domain profile. 52 216 IPR000157 GO:0007165
Lja3g3376 1125 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 478 IPR027417 -
Lja3g3376 1125 Gene3D Ribonuclease Inhibitor 760 950 IPR032675 -
Lja3g3376 1125 Gene3D - 219 379 IPR027417 -
Lja3g3376 1125 Gene3D - 51 218 IPR035897 -
Lja3g3376 1125 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 852 909 IPR044974 GO:0006952
Lja3g3376 1125 SMART till_3 53 190 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3376 Lja-Chr3 66516353 66538529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3376 54 823 WRKY Transcription Factor Family AT4G12020 31.985 2.25e-89 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3376 - - aprc:113850949 1150.19