Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3374 ATGATGCTCTATCTCTTTGCTTTCTTCCCTCTCTGTTTTCACTTTCTCTTCAGCTTCGCACTTTCTCTCTCCTCCGACGGCCTCGCACTTCTCTCTCTAAAATCCGCCGTCGACCAACCCACCGCCGGCGGCGCATTCGCCGACTGGAACGACGGCGAGCCTACGCCGTGCGCCTGGTCGGGAATCTCCTGTGCGAACATCTCCGGCCAGACTGAGCCGCGCGTCGTCGGAATCGCCCTCGCCGGGAGGTCGCTACGAGGTTACCTTCCGTCGGAGCTCGGTACCCTCCGCTACCTCCGCCGTCTCAATCTCCATGACAATGAGTTCTACGGTGTTGTTCCCGTGCAGCTCTTCAATGCCACTGCACTTCACAGCATCTTCCTCCACCGGAACAATCTCTCTGGTCCTCTCTCCCCCTCCGTCTGCAATGTCCCCCGCCTCCAAAACCTCGACCTCTCTGACAATTCATTTTCCGGCAGCATCCCAGACGCCCTCAAGAACTGCAAGCCGCTCCAGCGGCTGATTCTCGCCCGGAACAAATTCTCCGGCGAGATTCCCACCGGCGTGTGGCCGGACCTCGAGAACCTCGTTCAGCTCGACCTCTCCGGCAACGACCTCGAGGGTTCAATCCCGGAGGAAATCGGCGACCTCGGTTCACTCACCGGCACACTGAACCTCTCGTTCAACCACCTCTCCGGCGGTGTTCCGAAGTCTCTCGGGAAATTGCCGGCCACCGTGAGCTTTGACCTGAGAAACAACAACCTTAGCGGCGAGATTCCCCAAACGGGGTCGTTTTCAAACCAGGGCCCAACCGCATTCCTTGGCAACCCTAACCTGTGCGGGTTTCCTTTAAGAAAACCCTGCTCTGGTTCGGACCGGGGCTCGGTGGGCCCCAGCTCATCTTCGCGTGAGCCGGTTCACCGGGACAAAGGGCTGAGCCCCGGTTTGATTATTTTGATCTCAGTGGCTGATGCTGCTGGGGTTGCTCTTGTTGGGCTTGTGGTTGTGTATGTTTATTGGAAAAATAAAGATGATTCCAATGGGTGCAGCTGCACTGGGAAGAGAAAGTTCGGTGTGAATGGTGATGATGATAACGAGAAAGCGAATGCGTGTGCATTCCCGTGTATTGGCGGTTCGAAGAATGATGAAGATGATGATGAGATTGAAGTAGGGGAAGGGAAAGGGGAAGGAGAATTGGTGACAATTGATAAAGGTTTCAGCTTTGAACTTGATGAGCTTTTGAGGGCTTCAGCTTATGTGTTAGGGAAGAGTGGGTTGGGGATTGTGTACAAGGTGGTGTTGGCAAATGGGGTGCCTGTGGCTGTGAGGAGGCTTGGGGAGGGTGGAGAACAGAGGTACAAGGAGTTCGCGGCGGAGGTGCAGGCCATTGGGAAGGTGAAGCACCCTAACATTGTGAGGTTGAGAGCTTACTATTGGGCCCATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAACTTGACCAATGCGCTTCGAGGTAGAAATGGCCAACCATCTCCAAATCTTTCATGGTCCACCAGGCTGAAAATCGCGAAAGGAACGGCCAGGGGCTTGGCTTATCTCCATGAATGCAGTCCAAGAAAGTTTGTCCATGGCGACATCAAACCCTCCAACATCCTTCTCGAGGCCGACTTTCACCCATACATTTCTGATTTCGGCCTTAACCGGCTGATCAGCATCACTGGCAACAACCCCTCGACCGGCGGCTTCATGGGAGGAGCACTTCCTTACATGAACAAGTACTCATCACAGAAGGAGAGAACCGACAACAATTACAAGGCCCCCGAGGCTCGTGTCCCCGGCTGCAGACCCACCCAGAAATGGGACGTGTATTCATTCGGAGTCGTGTTGCTTGAACTGCTAACTGGGAAATCACCAGAATCATCATCTCCAACCACATCATCAACTTCTGTGGAAGTTCATGACTTGGTAAGGTGGGTGAGAAGTGGGTTTGATCAAGAAAGCCCGTTATCTGAGATGGTTGATCCTTCTCTGCTACAAGAAGTGCGTGTTAAGAAAGAGGTTCTTGCTGTGTTTCATGTAGCTCTTGCTTGCACTGAGGGAGATCCTGAGGTCAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAGGATTGGAAATTGA 2154 0.5325 MMLYLFAFFPLCFHFLFSFALSLSSDGLALLSLKSAVDQPTAGGAFADWNDGEPTPCAWSGISCANISGQTEPRVVGIALAGRSLRGYLPSELGTLRYLRRLNLHDNEFYGVVPVQLFNATALHSIFLHRNNLSGPLSPSVCNVPRLQNLDLSDNSFSGSIPDALKNCKPLQRLILARNKFSGEIPTGVWPDLENLVQLDLSGNDLEGSIPEEIGDLGSLTGTLNLSFNHLSGGVPKSLGKLPATVSFDLRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKPCSGSDRGSVGPSSSSREPVHRDKGLSPGLIILISVADAAGVALVGLVVVYVYWKNKDDSNGCSCTGKRKFGVNGDDDNEKANACAFPCIGGSKNDEDDDEIEVGEGKGEGELVTIDKGFSFELDELLRASAYVLGKSGLGIVYKVVLANGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLTNALRGRNGQPSPNLSWSTRLKIAKGTARGLAYLHECSPRKFVHGDIKPSNILLEADFHPYISDFGLNRLISITGNNPSTGGFMGGALPYMNKYSSQKERTDNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPESSSPTTSSTSVEVHDLVRWVRSGFDQESPLSEMVDPSLLQEVRVKKEVLAVFHVALACTEGDPEVRPRMKTVSENLERIGN* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3374 717 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 3 716 - -
Lja3g3374 717 Gene3D Ribonuclease Inhibitor 22 193 IPR032675 -
Lja3g3374 717 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 716 - -
Lja3g3374 717 SUPERFAMILY Protein kinase-like (PK-like) 420 712 IPR011009 -
Lja3g3374 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Lja3g3374 717 Gene3D Phosphorylase Kinase; domain 1 398 490 - -
Lja3g3374 717 ProSiteProfiles Protein kinase domain profile. 415 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3374 717 Gene3D Transferase(Phosphotransferase) domain 1 491 715 - -
Lja3g3374 717 SMART serkin_6 419 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3374 717 Pfam Leucine rich repeat N-terminal domain 24 64 IPR013210 -
Lja3g3374 717 CDD STKc_IRAK 421 715 - -
Lja3g3374 717 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Lja3g3374 717 Pfam Protein kinase domain 420 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3374 717 SUPERFAMILY L domain-like 24 285 - -
Lja3g3374 717 Gene3D Ribonuclease Inhibitor 194 290 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3374 Lja-Chr3 66507287 66510723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3374 20 715 Receptor kinase-like Gene Family AT1G67510 68.636 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja3g3374 Pkinase 6.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3374 - - var:108346287 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3337 1 41494542 41498863 Lja3g3374 3 66507287 66510723 PCT