Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3358 ATGGCTCAGTATCCTTGTGATAACCAAGGGGTTTGTATGGTGAGCAAGGTTTTTCCTCCTGAGGAAGAAAAGCTCAAATGCATCTCCTGTACCACCCAATGGCACGTCCCTTGCCTCTCCTCCTCATCCTCCTCCCTCCCACCCACCCTCGCCGCCACTAATGCCTGGGAATGTCCTGATTGCTCCAATCTCATCTCAGCCCCTGCCCAACCTCGTAGCGGCGGCTCCGATAAAGAGCTGCTTTCTTCCGTCTTAGAGGTGGAGGCCGATGCTTCTCTCACACCAAATGAAAAGTCTAGAAAACGCCAAGCTATCCTTGCCGGAAAATCCGTCGCATTCGACGAAAAAGAAGACGACAACATGTCTATGTCTCAGAAGCTCACCCGCACTATCAACTGCTCTATATGTATTGAACTTCCTGAGAGGCCTGTCACGACTCCTTGTGGACACAGCTTCTGTCTAACGTGCTTTAAAAAATGGATTCGGCAAGGGAAACGAACTTGTGCCAATTGTCGAGAGAGAATCCCTGCAAAGATGGCGAGCCAGCCTCGTATCAATTCTGCACTAGTATTTGCCATCCGTATGGCGAGGGCATCCAACAATAGGGGAAGGTGTTCTACTGCTACTCATTTTCTGCATAACCAAGATAAACCAGACAAGGCATTTACCACTCCTGAGGCAAAGAGGAAGGGTCTTGCAAATGCTAGTAGTGGAAAGATTTTCATGACTGTTCCAACTGATCATTTTGGTCCGATCGGTCCTGAGAACGACCCTACGCGGAATCAGGGCTTGCTTGTCGGCGAATCATGGCCTAATAGACAAGAGTGCAGGCAATGGGGTGCTCACTTTGTAACCGTTGGAGGCATTTGTGGACAATCCGCCCGAGGAGCTCAATCTGTTGTTCTATCTGGGGGATATGTTGATGACCTAGACTACGGAGAATGGTTTCTCTATACTGGAAGCGGTGGTAAAAATCTTAGCGGGAATAAACGAACAAATAAGGAGCACTCTTCCGATCAAAAATTTAAGGGGTACAACCAGTCTCTTCAGATGAGTTGTCTGAAAGGTTATCCTGTTCGAGTTGTCAGATCTCACAAAGAGAAGCGATCCTCATATGCCCCTGAGAGTGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAATGTTGGCAGATAACAGGACTGCAGGGTTTCACAATCTGCCGGTATTTATTTGTTAGATGTGACAATGAACCTGCCCCGTGGACAAGTGATGATCATGGGGACAAGCCTAGACCTTTACCAGTTATCTGCGAGTTGGAAAAGGCCACAAACATACATGAAAGAATAGAAGAACCTGCTTGGGATTTTGATGATAAGGAATCTAGCTGGAAATGGATGAAACCACCCCCTCCTAGTGGGAAAAAGGAACCCACACAATTACCTAAGTCAACTAAAGAGGCAAAACAGTTCCGATATAAGTCAATCAAGGAACAATTGCGTAGAGGGTTCTCATGCCTCATATGTAAGGAGGTCATGGTCTCACCAGTTACAACTCCATGTGCTCATAATTTTTGCAAGTCATGCTTAGAGGGTGTATTTGTTGGAAAATCTTATGTCAAAGAGAGAAGCATGGGTGGAAGAACACTTCGATCCCAGAAAGTTGTGATGAAATGTCCTGCTTGCACTGTTGACATTGCTGATTATCTTCAGAACCTTCAGGTTGATATAGATTTGAAGGCTGCAATTGAGATACTGAAAGCCAAAGTTGAAGAAAATGAAGAGTTATTGAAATCAAGTGAGGATTCAAATACTTGCAAGGGTGAACATTCTGGTTCAGTGAAACAAAACTTTGTGGAGGAGTTGAATAGTTCAACCGAGGCTAATAAGGCACTGGATCAAGAAGTGAAGTGCAATGGAAAAAGAAAGAAAATTGATGGTGATAAAGGAGATGGTGAAAAGGCTAAGAGAGGTAGAAAACCCAAAAAGGTTGAGAAAGCAGTGGATGACCCAAAGATTCTCTAG 2004 0.4501 MAQYPCDNQGVCMVSKVFPPEEEKLKCISCTTQWHVPCLSSSSSSLPPTLAATNAWECPDCSNLISAPAQPRSGGSDKELLSSVLEVEADASLTPNEKSRKRQAILAGKSVAFDEKEDDNMSMSQKLTRTINCSICIELPERPVTTPCGHSFCLTCFKKWIRQGKRTCANCRERIPAKMASQPRINSALVFAIRMARASNNRGRCSTATHFLHNQDKPDKAFTTPEAKRKGLANASSGKIFMTVPTDHFGPIGPENDPTRNQGLLVGESWPNRQECRQWGAHFVTVGGICGQSARGAQSVVLSGGYVDDLDYGEWFLYTGSGGKNLSGNKRTNKEHSSDQKFKGYNQSLQMSCLKGYPVRVVRSHKEKRSSYAPESGVRYDGIYRIEKCWQITGLQGFTICRYLFVRCDNEPAPWTSDDHGDKPRPLPVICELEKATNIHERIEEPAWDFDDKESSWKWMKPPPPSGKKEPTQLPKSTKEAKQFRYKSIKEQLRRGFSCLICKEVMVSPVTTPCAHNFCKSCLEGVFVGKSYVKERSMGGRTLRSQKVVMKCPACTVDIADYLQNLQVDIDLKAAIEILKAKVEENEELLKSSEDSNTCKGEHSGSVKQNFVEELNSSTEANKALDQEVKCNGKRKKIDGDKGDGEKAKRGRKPKKVEKAVDDPKIL* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3358 667 Coils Coil 608 628 - -
Lja3g3358 667 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 641 IPR045134 -
Lja3g3358 667 Coils Coil 576 596 - -
Lja3g3358 667 SUPERFAMILY FYVE/PHD zinc finger 4 63 IPR011011 -
Lja3g3358 667 ProSiteProfiles YDG domain profile. 259 407 IPR003105 -
Lja3g3358 667 MobiDBLite consensus disorder prediction 627 667 - -
Lja3g3358 667 ProSiteProfiles Zinc finger RING-type profile. 499 556 IPR001841 -
Lja3g3358 667 ProSiteProfiles Zinc finger RING-type profile. 133 172 IPR001841 -
Lja3g3358 667 SUPERFAMILY PUA domain-like 233 429 IPR015947 -
Lja3g3358 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 203 IPR013083 -
Lja3g3358 667 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 2 641 - -
Lja3g3358 667 MobiDBLite consensus disorder prediction 453 477 - -
Lja3g3358 667 Pfam RING-type zinc-finger 499 553 IPR027370 -
Lja3g3358 667 MobiDBLite consensus disorder prediction 623 667 - -
Lja3g3358 667 Pfam Zinc finger, C3HC4 type (RING finger) 133 171 IPR018957 GO:0046872
Lja3g3358 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 477 603 IPR013083 -
Lja3g3358 667 SUPERFAMILY RING/U-box 128 179 - -
Lja3g3358 667 Gene3D - 230 429 IPR036987 -
Lja3g3358 667 ProSitePatterns Zinc finger RING-type signature. 514 523 IPR017907 -
Lja3g3358 667 Pfam SAD/SRA domain 261 410 IPR003105 -
Lja3g3358 667 SMART ring_2 499 555 IPR001841 -
Lja3g3358 667 SMART ring_2 133 171 IPR001841 -
Lja3g3358 667 SMART G9a_1 254 411 IPR003105 -
Lja3g3358 667 CDD RING-HC 133 171 - -
Lja3g3358 667 SUPERFAMILY RING/U-box 491 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3358 Lja-Chr3 66284447 66288484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3358 3 585 C2H2 Transcription Factor Family AT5G39550 56.324 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3358 K10638 - gmx:100801535 903.664