Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3354 ATGGCAACTCCCACAGCTTACCAAGAAAACCTTCCAGCATCACCAGAATGGCTAAACAAAGGAGACAACGCATGGCAAATGACAGCAGCAACTCTGGTTGGCCTCCAAAGCATGCCAGGCCTAGTGATTCTCTATGCCAGCATAGTCAAAAAGAAATGGGCAGTGAACTCTGCTTTCATGGCCCTCTATGCTTTCGCAGCGGTTCTCTTATGTTGGGTCCTTTTGTGTTACCGTATGGCATTTGGAGACAAGCTTTTCCCTTTCTGGGGAAAGGGTGCACCAGCACTAGGCCAGAAATTTCTCATAAACCAAGCCAGTGTCCCTGAAAGCACACACTACTTCAACAATGGTTCCATTGAAACCCAAACTCAAAGGCCTTTTTATCCCATGGCTACTCTTGTGTATTTCCAGTTCAATTTTGCTGCTATTACAATGATTTTGCTGGCTGGATCTGTGCTTGGCAGAATGAACATCAAGGCTTGGATGGCTTTTGTTCCTCTCTGGCTCATTTTCTCATACACTGTTGGGGCATTTAGTATTTGGGGTGGTGGTTTTCTGTACCACTGGGGTGTCATCGATTTTTCTGGTGGCTATGTCATCCATCTTTCCTCTGGAATCGCCGGTTTCACTGCCGCTTACTGGGTTGGACCAAGGTTAAAGAGTGACAGGGAGAGGTTCCCACCAAACAATGTGTTGCTTATGCTAGCGGGTGCTGGGTTGCTGTGGATGGGTTGGTCAGGGTTCAATGGAGGAGCACCATATGCAGCCAACATTGATGCTTCTATTGCTGTGCTCAACACTAACATATGTGCAGCCACTAGCCTCCTTGTCTGGACCTCTCTGGATGTTGCCTTCTTCGGCAAGCCTTCAGTCATCGGTGCCGTTCAGGGCATGATGACCGGGCTTGTTTGCATCACCCCCGGAGCAGGACTTGTGCAATCGTGGGCGGCTATAGTGATGGGAATACTATCTGGAAGCATTCCATGGGTCTCCATGATGATCCTTCACAAGAAGTCAAGTCTTCTACAGAAGGTAGATGATACACTTGGAGTGTTTCACACACATGCTGTGGCTGGGCTTTTGGGTGGCCTCCTCACAGGTCTGTTAGCAGAACCAGAACTTTGCAGGCTCGTATTGCCGGTGAGTAACTCAAGGGGCGCCTTCTACGGTGGCACCGGCGGTGCACAGTTCTTGAAGCAATTGGTGGCAGCACTATTCGTCATTGGATGGAACTTGGTTTCCACCACTCTCATTCTTCTTGCCATTCAATTGTTCATTCCCTTGAGGATGCCGGACTACCAGCTCGAGATTGGTGATGACGCCGTTCATGGTGAGGAAGCTTATGCCCTGTGGGGTGATGGAGAAAAATATGATCCAACCAAGCATGGATCCACAATAGTGGATGAAACTCTAGCATCGGCCTATAGTGTTGGAGCAAGGGGTGTAACCGTAAATTTATGA 1461 0.4873 MATPTAYQENLPASPEWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLLCYRMAFGDKLFPFWGKGAPALGQKFLINQASVPESTHYFNNGSIETQTQRPFYPMATLVYFQFNFAAITMILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSIWGGGFLYHWGVIDFSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIDASIAVLNTNICAATSLLVWTSLDVAFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLLAEPELCRLVLPVSNSRGAFYGGTGGAQFLKQLVAALFVIGWNLVSTTLILLAIQLFIPLRMPDYQLEIGDDAVHGEEAYALWGDGEKYDPTKHGSTIVDETLASAYSVGARGVTVNL* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3354 486 Gene3D Ammonium transporter AmtB like domains 2 451 IPR029020 -
Lja3g3354 486 PANTHER AMMONIUM TRANSPORTER 1 483 - -
Lja3g3354 486 PRINTS Rhesus blood group protein signature 137 153 IPR002229 GO:0005887
Lja3g3354 486 PRINTS Rhesus blood group protein signature 232 250 IPR002229 GO:0005887
Lja3g3354 486 PRINTS Rhesus blood group protein signature 263 285 IPR002229 GO:0005887
Lja3g3354 486 PRINTS Rhesus blood group protein signature 318 336 IPR002229 GO:0005887
Lja3g3354 486 PRINTS Rhesus blood group protein signature 356 372 IPR002229 GO:0005887
Lja3g3354 486 Pfam Ammonium Transporter Family 24 448 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lja3g3354 486 TIGRFAM amt: ammonium transporter 22 448 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lja3g3354 486 SUPERFAMILY Ammonium transporter 17 430 - -
Lja3g3354 486 ProSitePatterns Ammonium transporters signature. 193 218 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lja3g3354 486 PANTHER AMMONIUM TRANSPORTER MEP2 1 483 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3354 Lja-Chr3 66073515 66077675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3354 130 486 Inorganic Solute Cotransporters AT2G38290 76.602 0.0 544
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3354 K03320 - gmx:100798599 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3354 3 66073515 66077675 Lja3g3354 3 66073515 66077675 ECH