Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3336 ATGGCCTCAAGTTCGACTTGGACGTCAAAGGAAAATAAAGATTTTGAGAATGCTTTGGCCATTTTTGACGAGAAAACCCCAGATCGGTGGGAGAAAATAGCCAGTGCAGTGGGAGGAGGGAAAACTGTGGACGAAATAAAAATTCACTATGAGAAGCTGGTGGAAGATTTGAAGATGATCGATGAAGGTCATGTTCCCCTTCCTAATTACAGAAATATTGTACGTAGTCGTAGGAGGAATCATCCCAGGTCACAATCACAGAGATGA 267 0.427 MASSSTWTSKENKDFENALAIFDEKTPDRWEKIASAVGGGKTVDEIKIHYEKLVEDLKMIDEGHVPLPNYRNIVRSRRRNHPRSQSQR* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3336 88 ProSiteProfiles Myb-like domain profile. 1 54 IPR001005 -
Lja3g3336 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 77 - -
Lja3g3336 88 ProSiteProfiles SANT domain profile. 2 58 IPR017884 -
Lja3g3336 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 77 IPR044636 GO:0003700
Lja3g3336 88 SUPERFAMILY Homeodomain-like 5 61 IPR009057 -
Lja3g3336 88 Gene3D - 1 67 - -
Lja3g3336 88 SMART sant 3 56 IPR001005 -
Lja3g3336 88 CDD SANT 6 54 IPR001005 -
Lja3g3336 88 Pfam Myb-like DNA-binding domain 5 53 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3336 Lja-Chr3 65708916 65709182 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja3g3336 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3336 - - gmx:100804049 114.775