Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3323 ATGGAGGGTCATCACCATCTACATCTGCAGCAGCAGCAGCAGCATCTTCTTCCTCATCAGAACATCATCACTAACGTGGATGTGACTGATAGGTTCCCTCAATGGAGCATCGCAGAGACCAAGGAGTTCCTGGTGATGAGAGCAGAGCTGGATCAGGCTTTCATGGAGACTAAAAGGAACAAGCAGTTGTGGGATGTTATTTCCACCAACATGAAGGAAAAGGGTTACCATAGAAGTGCAGATCAATGCAAGTGCAAGTGGAAAAACCTTGTAACCCGCTACAAGGGATGTGAAACAATGGAGCAAGAAGCAGGGAGACAGCAATTCCCATTTTACAATGAGCTCCAAGCAACATTCAATGCAAGGATGCAGAGAATGATGTGGGCGGAAGCTGAAGCTGCAGGTTCAAAGAAGAAGGCTGTGGAGCTCTCATCGGATGACGAAGACGATGTTAATGAAGAGAGTGCTGAAGCAGACCACCAGAAGGCCGGTAACCGAAGAAAGAAGAAGAAGGCTAAGGTGGCTTGTGGAAGTGGTGGTTTGAACAATTTGAAGGAGATTCTGGAGGAGTTCATGAGACAACAGATGCAGATAGAAGCGCAGTGGATGGAAGCGTTCGAGTCGAGGGAGAACGAGAGGAGATTGAAGGAGATGGAGTGGAGGCAGCAAATGGAAGTCTTGAAGAATCAGAGGATAATGATGGACCAAAGATGGAGAGAAAGGGAGGAGCAAAGGAGGATTAGAGAAGAAGCTAGAGCTGAGAAGAGGGATGCTCTAATCACAGCTCTTCTAAACAAGCTAGAAAGGGAAGAAATGTAG 819 0.4701 MEGHHHLHLQQQQQHLLPHQNIITNVDVTDRFPQWSIAETKEFLVMRAELDQAFMETKRNKQLWDVISTNMKEKGYHRSADQCKCKWKNLVTRYKGCETMEQEAGRQQFPFYNELQATFNARMQRMMWAEAEAAGSKKKAVELSSDDEDDVNEESAEADHQKAGNRRKKKKAKVACGSGGLNNLKEILEEFMRQQMQIEAQWMEAFESRENERRLKEMEWRQQMEVLKNQRIMMDQRWREREEQRRIREEARAEKRDALITALLNKLEREEM* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3323 272 Pfam Myb/SANT-like DNA-binding domain 34 117 IPR044822 -
Lja3g3323 272 ProSiteProfiles Myb-like domain profile. 35 91 IPR001005 -
Lja3g3323 272 Gene3D - 35 96 - -
Lja3g3323 272 MobiDBLite consensus disorder prediction 137 170 - -
Lja3g3323 272 PANTHER - 3 270 - -
Lja3g3323 272 CDD GT1 33 98 - -
Lja3g3323 272 Coils Coil 181 201 - -
Lja3g3323 272 PANTHER TRANSCRIPTION FACTOR MYB FAMILY-RELATED 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3323 Lja-Chr3 65501422 65503113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3323 5 270 Trihelix Transcription Factor Family AT2G38250 52.727 9.05e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja3g3323 Myb_DNA-bind_4 3.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3323 - - gmx:100778195 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3323 3 65501422 65503113 Lja3g3323 3 65501422 65503113 ECH