Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3321 ATGGCGTCCAGTCCCCGCACCGTTGAAGAGATCTTCAAGGACTACACCGCTCGCAGAGATGCCATCCTTCGTGCTTTAACTCAAGATGTTGATGAATTCTATGGACTCTGTGATCCAGATAAGGAGAACCTGTGCCTCTATGGACATCCAAATGAATCATGGGAGGTGACTCTGCCAGCAGAGGAGGTTCCACCTGAGCTTCCGGAGCCTGCTCTCGGAATCAATTTTGCTAGGGATGGAATGAACCGTAGGGACTGGCTTTCTCTGGTTGCCGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCATTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGGCTATTTAGCTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTCACTGAGAGGAAGCCAATAAAAGACAAGCCCACTGTAGACAGTGGAAGCAAATCTCGGGGTGGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAGCAACCCAAAGTTCGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTCTGTGGGAGCTGCGGCGGAAATTACAATGCGGATGAATTCTGGATTGGATGTGATGTGTGTGAGAGGTGGTACCATGGAAAATGTGTGAAGATTACTCCTGCAAAGGCTGAGAGCATAAAGCAGTACAAATGCCCATCATGCAGCATGAAGCGGAGCAGGCCCTAG 717 0.4868 MASSPRTVEEIFKDYTARRDAILRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGGTKRSSDGQVKSSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWYHGKCVKITPAKAESIKQYKCPSCSMKRSRP* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3321 238 Pfam PHD-finger 185 233 IPR019787 -
Lja3g3321 238 ProSitePatterns Zinc finger PHD-type signature. 185 231 IPR019786 -
Lja3g3321 238 CDD PHD_AL_plant 184 234 IPR044104 -
Lja3g3321 238 MobiDBLite consensus disorder prediction 138 176 - -
Lja3g3321 238 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Lja3g3321 238 SMART PHD_3 184 232 IPR001965 -
Lja3g3321 238 ProSiteProfiles Zinc finger PHD-type profile. 182 234 IPR019787 -
Lja3g3321 238 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 2 237 - -
Lja3g3321 238 PANTHER CPG BINDING PROTEIN 2 237 IPR045104 GO:0006355|GO:0042393
Lja3g3321 238 SUPERFAMILY FYVE/PHD zinc finger 173 236 IPR011011 -
Lja3g3321 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 232 IPR013083 -
Lja3g3321 238 MobiDBLite consensus disorder prediction 146 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3321 Lja-Chr3 65387677 65391167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3321 2 237 Alfin-like Transcription Factor Family AT5G05610 78.059 2.55e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja3g3321 Alfin 1.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3321 - - gmx:100779170 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3321 3 65387677 65391167 Lja3g3321 3 65387677 65391167 ECH
Lja1g3386 1 42165205 42170788 Lja3g3321 3 65387677 65391167 PCT