Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3319 ATGGGAGTGGACTACTACAAAGTCCTTCAGGTAGATCGAAGTGCCAAAGATGATGATCTCAAGAAAGCTTATCGCAAGCTTGCCATGAAGTGGCACCCTGATAAGAACCCTAACAACAAGAAAGAAGCTGAAGCCAATTTCAAGAAAATCTCTGAGGCCTATGATGTTTTGAGTGATCCACAAAAGAGAGCGGTGTATGATCAGTTTGGTGAGGAGGGGTTGAATGGCCAGGTGCCACCCCCTGGTGCTGGCGGATTTTCCGGTGGCGGTGATGGCGGGCCGGCGTCGTTCCGGTTTAATCCGAGAAGTGCTGATGATATATTTTCGGAATTCTTCGGGTTCTCGAGTCCCTTTGGTGGAATGGGTGATATGGGTGGTCGTGCTGGTGCGTCTGGCTTTCCCAGGGGCATGTTTGGGGATGACATTTTCAATTCTTTTCGGAGTGGGGCTGGAGAAGGCTCTGGCAATGCACTAAGAAAAAGTGCTCCCATTGAGAGAACATTGCAATGCAGCTTGGAGGATTTGTACAAAGGGACTACCAAAAAAATGAAGATTTCCAGGGATGTTACTGATTCCATTGGGAGGTCCACCACAGTAGAGGAAATTCTAACCATTGAGATCAAGCCGGGATGGAAGAAAGGAACAAAAATAACTTTTCCTGAAAAGGGAAATGAGCAAAGAGGAGTTATCCCCGCGGACCTCATTTTTATCATCGACGAGAAGCCTCACAGCGTCTTTAAGAGGGACGGCAATGACCTTGTTGTCACGCAGAAGATATCTCTTGTAGAAGCTCTAACCGGTTACACGGCGCAAATCACAACCCTTGATGGGAGGAATCTTACTGTCTCTGTCAACAACATCATTAGTCCAACATATGAAGAGGTTATTAAAGGAGAGGGTATGCCGATTCCTAAGGAACCTTCGAAAAGGGGAAACTTGAGAATCAAATTCAATATCAAGTTTCCCTCCAGACTCACATCCGAGCAGAAAACTGGCATTAAGCGGTTACTGACATCTCCCTAA 1023 0.4653 MGVDYYKVLQVDRSAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEANFKKISEAYDVLSDPQKRAVYDQFGEEGLNGQVPPPGAGGFSGGGDGGPASFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRAGASGFPRGMFGDDIFNSFRSGAGEGSGNALRKSAPIERTLQCSLEDLYKGTTKKMKISRDVTDSIGRSTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPADLIFIIDEKPHSVFKRDGNDLVVTQKISLVEALTGYTAQITTLDGRNLTVSVNNIISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSRLTSEQKTGIKRLLTSP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3319 340 CDD DnaJ_C 162 325 - -
Lja3g3319 340 Gene3D DnaJ domain 3 123 IPR036869 -
Lja3g3319 340 CDD DnaJ 4 59 IPR001623 -
Lja3g3319 340 PANTHER BNAANNG28460D PROTEIN 1 339 - -
Lja3g3319 340 SMART dnaj_3 3 62 IPR001623 -
Lja3g3319 340 Pfam DnaJ domain 4 67 IPR001623 -
Lja3g3319 340 Gene3D - 163 241 - -
Lja3g3319 340 SUPERFAMILY Chaperone J-domain 3 93 IPR036869 -
Lja3g3319 340 Pfam DnaJ C terminal domain 164 322 IPR002939 -
Lja3g3319 340 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lja3g3319 340 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lja3g3319 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 245 331 IPR008971 GO:0006457|GO:0051082
Lja3g3319 340 Gene3D - 243 323 - -
Lja3g3319 340 MobiDBLite consensus disorder prediction 72 99 - -
Lja3g3319 340 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 339 - -
Lja3g3319 340 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lja3g3319 340 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lja3g3319 340 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lja3g3319 340 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lja3g3319 340 SUPERFAMILY HSP40/DnaJ peptide-binding domain 164 243 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3319 Lja-Chr3 65365688 65369355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3319 5 67 C2H2 Transcription Factor Family AT1G74250 40.299 2.14e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3319 K09510 - twl:120013812 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3319 3 65365688 65369355 Lja3g3319 3 65365688 65369355 ECH
Lja1g3387 1 42174839 42178497 Lja3g3319 3 65365688 65369355 PCT