Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3308 ATGAGTACGCCCTTCAAGGATTCCATCAAAGCTCTTGAAGCTGACATACAGCATGCCAATAATCTAGCTTCTGATTATCCAAAAGAATCTGATGGAGCCTTCTTACAGATGAGACTGTCTTATAGCCCTGCTGCTGAATTTTTCCTTTTTATGGTTAAGTGGATTGATTGTCGTCTCGCTGGAGCCTTGGGATTTCTTAGGATTCTCATATACAAGGCATATAATGATGGGAAGACAACCATGTACGTTTATGAAAGAAAAGCCAGCCTGAAGGAGTTTTATGGTGTGATATTTCCGTCTTTATTACAACTCCACAGAGGAATCACTGATGTAGATGAAAGGAAACAAAGGGATTTATGCGCTACAAAGTACAAGCCTAAAGATATGATTAGAAAAGGAAAACTATCTGACATTGATTTAGAGAGGGAAGAAGAATGTGGTATTTGTATGGAGACGAACAAGAAGGTTGTGTTGCCCAATTGCAACCATTCATTGTGCGTGAAATGCTTCAGAGACTGGCACACCCGATCTCAATCTTGCCCTTTCTGCCGGGACAGTCTTAAAAGAGTAAAGTCTGGTGATCTTTGGATCTACATGAACAGCAGTGACATAGATGACTTGACTTCAATCAACAAGGAGAATTTAGAAAGGCTGTTTTTGTACATTGACAAGTTACCTTTGACATTGCCAATTCTGAATGTTCAGGCCCTCGACAATTCTGAATTCCATTTAGTGAACTCTGGATCTACATGA 753 0.3997 MSTPFKDSIKALEADIQHANNLASDYPKESDGAFLQMRLSYSPAAEFFLFMVKWIDCRLAGALGFLRILIYKAYNDGKTTMYVYERKASLKEFYGVIFPSLLQLHRGITDVDERKQRDLCATKYKPKDMIRKGKLSDIDLEREEECGICMETNKKVVLPNCNHSLCVKCFRDWHTRSQSCPFCRDSLKRVKSGDLWIYMNSSDIDDLTSINKENLERLFLYIDKLPLTLPILNVQALDNSEFHLVNSGST* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3308 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 193 IPR013083 -
Lja3g3308 250 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Lja3g3308 250 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 228 - -
Lja3g3308 250 PANTHER RING FINGER PROTEIN 41, 151 1 228 - -
Lja3g3308 250 SUPERFAMILY RING/U-box 134 190 - -
Lja3g3308 250 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Lja3g3308 250 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3308 Lja-Chr3 65162910 65166005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3308 94 195 C3H Transcription Factor Family AT5G01960 30.841 5.12e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3308 K25840 - zju:107430836 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3308 3 65162910 65166005 Lja3g3308 3 65162910 65166005 ECH
Lja1g3399 1 42403846 42412733 Lja3g3308 3 65162910 65166005 PCT