Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3299 ATGGAAGGAAAAGATGAAGATGTAAGAGTAGGAGCCAACAGGTACACAGAGAGGAACCCAATAGGAACCGCTGCTCAGTCTCAAGATCAAGATACCAGTAGCAGAGACTACAAAGAGCCTCCCTCAGCACCTTTCTTCGAGCCCGGCGAGCTGTCATCATGGTCCTTCTACAGAGCCGGCATAGCAGAGTTCGTCGCCACGTTCTTGTTTCTTTACATCACCGTGTTAACTGTGATGGGTGTGGCTAAATCCAAGAGCAAGTGTTCCACTGTTGGTGTCCAAGGCATAGCTTGGTCATTTGGTGGAATGATCTTTGCTCTTGTCTATTGCACTGCTGGCATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTGTTCTTGGCACGCAAGCTATCTTTGACCAGAGCAGTGTTTTACATAATTATGCAGTGCTTGGCAGCTATATGTGGCGCGGGTGTGGTGAAAGGGTTCCAACCACACCAATATGAGAGGCTTGGTGGTGGTGTAAACACTCTGAGTAAAGGATATTCCATAGGTGATGGCCTTGGAGCAGAGATTGTTGGCACATTTGTGCTTGTTTACACTGTGTTCTCTGCTACTGATGCCAAGCGAAACGCACGAGACTCGCACATTCCTATTTTGGCACCACTACCCATTGGTTTTGCTGTGTTTCTGGTGCATTTGGCTACAATTCCCATCACTGGAACTGGTATCAACCCTGCCAGAAGTCTAGGTGCAGCCCTTATTTTCAACAAGGACCAAGCGTGGGATGACCATTGGATATTTTGGGTAGGGCCATTCATTGGGGCAGCACTTGCAGCTCTGTATCATCAGATAGTGATCAGGGCCATTCCCTTCAAGTCAAAGTGA 876 0.4829 MEGKDEDVRVGANRYTERNPIGTAAQSQDQDTSSRDYKEPPSAPFFEPGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVAKSKSKCSTVGVQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLAAICGAGVVKGFQPHQYERLGGGVNTLSKGYSIGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHIPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAALIFNKDQAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKSK* 292
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3299 291 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PRINTS Major intrinsic protein family signature 100 124 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PRINTS Major intrinsic protein family signature 137 156 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PRINTS Major intrinsic protein family signature 186 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PRINTS Major intrinsic protein family signature 222 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PRINTS Major intrinsic protein family signature 58 77 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 Pfam Major intrinsic protein 50 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 291 IPR034294 -
Lja3g3299 291 Gene3D Glycerol uptake facilitator protein. 43 290 IPR023271 -
Lja3g3299 291 SUPERFAMILY Aquaporin-like 51 284 IPR023271 -
Lja3g3299 291 TIGRFAM MIP: MIP family channel proteins 62 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 CDD MIP 58 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja3g3299 291 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 1 291 - -
Lja3g3299 291 MobiDBLite consensus disorder prediction 1 44 - -
Lja3g3299 291 ProSitePatterns MIP family signature. 118 126 IPR022357 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g3299 Lja-Chr3 64617692 64619713 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3299 1 291 Major Intrinsic Protein MIP AT3G61430 82.818 3.49e-175 483