Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3296 ATGCCTTCTTCTTCCACCACCATAATTTCTAAATTCACCATCTACCCAGATCAGAAATCCACTGTCAAACCCCTTAAACTCTCTGTCAGTGACCTTCCAATGCTTTCATGTCACTACATCCAAAAGGGTGTATTGCTATCTGCACCACCCTATCCCTTTGATGACCTTGTTTTAACTCTTAAGGATTCTCTCTCCCTCGCCCTCTCCCACTTCCCCGCCCTCGCCGGCCGTTTCACCACCGACTCCGACGGTTACATTTACATTACCTGCAACGACGCCGGCGTGGATTTTATTCACGCTAAAGCCAAGCATCTCACCCTCAACGCCGTCGTTTCGCCCGGTCTCGTCGACGTGCATCCTTGTTTCAAGGAGTTTTTCGCCTACGACATGCCGGTTTCCTACTCCGGCCACCACATCCCCCTCGCCGCCGTCCAGGTCACCGAGCTCGCCGACGCTGTTTTCATCGGCTGTACTGTCAACCACGCCGTCACCGACGGCACCTCCTTCTGGCACTTCTTCAACACGTTCGCCGCCGTCGCCAAAGGCGGCGGCGCCAGGAAGCTCCCCAAGTCGCCGGACTTCACCCGTAACACCGTCTTCAACTCCGCCGCCGTGCTTCCCATCCCCGCCGGCGGCCCCGCCGTGACGTTCGACGCCGACGAGCCGCTCCGGGAGCGTGTCTTCCATTTCTCCCGTGAATCCATTCTGAAACTGAAACAGAAAGCAAACAGTAGCAGCAACGGATTCCCGGATTCCGCGGAGGTGATCGCGAAAAACGTGAACGACGGTTGGAAAACCGTTAATGGTAACGGTAACGGAAGGGTTGCCCCTATGGCTAACGGTAACGGCAGAAACGAGATCTCGTCGTTTCAATCTCTTTCCGCTCAGCTATGGCGTTCGGTGACACGTGCGAGGAAACTGGACGCAGCCAAAACGTCGACGTTTCGGATGGCGGTGAACTGCCGCCACAGATTGGAACCCAAGATGGATCCGTTTTACTTCGGCAATGCGATCCAGAGCATCCCCACCGTTGCTTCCGCCGGAGACATCCTCTCACGCGATCTACGATTCTGCGCCGATCTGCTTCACCAGAACGTCGTCGCGCACGACGACGCCACCGTGCGCTGCGGCATAGAGGGTTGGGAGAAGGCGCCGAGGCTGTTCCCGCTTGGGAACTTCGACGGCGCGATGATAACCATGGGAAGCTCGCCGCGGTTTCCGATGTACGACAACGACTTCGGGTGGGGCCGGCCACTGGCCATTCGGAGCGGCAAGGCGAACAAGTTTGACGGGAAGATCTCTGCGTTTCCGGGGAGAGATGGTAACGGCAGCGTGGATCTTGAGGTCGTTTTGGCACCTGAAACGATGGCGGGGCTTGAAAACGACATGGAGTTTATGCAGTATGTGACGGAAAGCGTGTGTTTGGCTTAG 1431 0.5681 MPSSSTTIISKFTIYPDQKSTVKPLKLSVSDLPMLSCHYIQKGVLLSAPPYPFDDLVLTLKDSLSLALSHFPALAGRFTTDSDGYIYITCNDAGVDFIHAKAKHLTLNAVVSPGLVDVHPCFKEFFAYDMPVSYSGHHIPLAAVQVTELADAVFIGCTVNHAVTDGTSFWHFFNTFAAVAKGGGARKLPKSPDFTRNTVFNSAAVLPIPAGGPAVTFDADEPLRERVFHFSRESILKLKQKANSSSNGFPDSAEVIAKNVNDGWKTVNGNGNGRVAPMANGNGRNEISSFQSLSAQLWRSVTRARKLDAAKTSTFRMAVNCRHRLEPKMDPFYFGNAIQSIPTVASAGDILSRDLRFCADLLHQNVVAHDDATVRCGIEGWEKAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPLAIRSGKANKFDGKISAFPGRDGNGSVDLEVVLAPETMAGLENDMEFMQYVTESVCLA* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3296 476 Pfam Transferase family 6 466 - -
Lja3g3296 476 Gene3D - 6 206 IPR023213 -
Lja3g3296 476 Gene3D - 221 466 IPR023213 -
Lja3g3296 476 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 5 470 - -
Lja3g3296 476 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 470 - -
Lja3g3296 476 SUPERFAMILY CoA-dependent acyltransferases 59 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3296 Lja-Chr3 64494262 64496072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3296 59 461 Monolignol Biosynthesis Gene Families AT5G48930 27.603 1.53e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3296 - - gmx:100780358 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3296 3 64494262 64496072 Lja3g3296 3 64494262 64496072 ECH