Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3287 ATGGAAGATTCCTTTTCACAGGAAGATAGACTAAATCCGAATCCGAGGATCCACGATGTGTTCTTGAGTTTCAGAGGGGAAGACACTCGTGCTTCCTTCACTTCACATCTCTATTCCGCTCTTCAAAACGCTGGGATCAAAGTTTTCAGGGACGACGATTCCCTTCCAAGGGGAGATCAAATTTCATACTCACTGCTGAAAGCAATTGAAGAATCTCAGATTTCAGTTATTGTTTTCTCACCAAATTATGCGGATTCTCGGTGGTGTCTGGATGAGTTGAACAAAATAATAAAATGTCACAGAACCATAGGTCAGGTGGTTCTGCCGGTGTTCTACGGTGTCGATCCCTCTGAAGTGCGACGCCAAACTGGTGAGTTTGGGAAAAAATTTCTCAATCTTAAAAACACAATGCCAATGGATGAAGACAATATGTTGCTAAACAATCTGATGCCCCGCTGGAAGCGTTGGAGGGAGGCACTTCGTGAGGCTGGTGGCATTGCAGGGTTTGTTGTCTTAAATTCTAGGAATGAAAGTGAGATTATCGAGAATATTGTTGAAAATGTTACTAGTTTGCTTGACAAGACAGACATGTTCATTGCCGATAATCCAGTGGGCGTTGAATCTCGAGTGCAAGATATGATTCAACTGCTAGACAACCAACAATCAAATGATGTTCTATTACTCGGGGTATGGGGTATGGGAGGAATTGGTAAAACAACCATTGCAAAAGCTATTTACAATAAAATTGGCCGCAATTTTCAGGGTAGGTGTTTCCTTGCAAATATTAGAGAAGCTGGGGAGCAAGATGCTGGACAAGTGCATTTACAAGAACAACTTCTGAAAAAAATATTAAAGGATAGACTTTGCAGTAAAAGAGTACTTCTTGTACTTGACGATGTGAATAAATTGGACCAACTGAATGCTTTGTGTGGAAGTCGTGAGTGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGATCAGCATATACTGAGAGGGAGTAGAGTTGACCAAGTTTACATAATGAAAGAAATGGATGAAAGAGAATCGATTGAGCTTTTTAGTTGGAATGCATTCAAGCAAGCGAGCCCTAAGGAAGATTTTGCTGAAATTTCAAGAAACGTAGTTGAGTATTCTGGGGGATTGCCACTAGCTCTTCAAGTCCTTGGGTCCTATTTGTTTGATAGGGTCGTAACAGAATGGAAGAGTGTATTGGAGAAACTCAGAACAATTCCCAATGACCAAGTACAGAAAAAGTTAAGAATAAGCTATGATGGTTTAAATGATGATAAAGAGAAAGATATATTCCTTGACATAGCTTGTTTCTTAATTGGGATGGACAGAGGTGATGCTATACAAATATTAGATGGCTGCAAACTTTTTGCAGAAATTGGAATAAGTGTCCTTGTTGAGAGAAGTCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCATTCGTGAGAAATCACCAAAGGAGCCTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGCAAAGATCTATGATGTGTTCTTGAGTTTCAGAGGGGAAGACAGCCGTGCAAAATTCATTTCACATCTCTACGCCTCTCTTCAAAATGCAGGGATTAATGTTTTCAGAGATGATGATGAGATTCAGCGAGGAGATACAATCTCCGTCTCACTGCTGGGAGCTATCAGAAGTTCTAGAATTTCTATCGTTGTTTTTTCAAAATATTATGCTAATTCTAAATGGTGTATGCTAGAGTTGGAGAACATTATGGAAATTCGCAGAACCATGGGTATGGTGGTTGTGCCAGTGTTCTATGAAGTAGATCCCTCAGATGTACGCCATCAGAGAGGTGATTTTGGAAAAGCTTTTGAAGATCTTATAGCAAAAACCTCGGTGGATAAATTCATGGTGAAGAATTGGAGGACAGCACTCCTTGAAGTTGGTGGCATGGCAGGTCTTGTCATCATAAATTCCAGGAACGAAAGTGAGGATATCATGAAAGTAGTTGAAGATGTTACTGATTTACTAGGCAAGACAGACATTATCGTTGCTGAGCACCCAGTGGGGGTGGAAGCTCGCGTTCAAAATGTGATTCAACTATTAAAAAGCCAGCAATCCAAAGATCCTCTATTCCTTGGGATATGGGGGATGGGGGGGCTGGGTAAAACAACTATTGCCAAAGCCGTGTATAATCGAATTCGTCGTGAATTTGAGACTAAGAGCTTCCTTCTAAATGTCAGAGAAGTTTGCGAACAAAATAATGGCATAGTTTCTTTGCAACAGAAGCTTCTTTCTGATATCTACAAAACAACGAAGATAAAGATAGATACAGTTGAAATGGGAAAAGAAGAACTGAAGAGAAGACTCAGTCAAAAGACAATATTTCTTGTGCTTGACGATGTGAATGATAAAGAACAATTGGATGCATTGTGTGGAAGTCGTGAATGGTTTGGTTACGGAAGTAGAATAATCACAACTAGAGATGAAAATATAGTTAAAAAGGAGTTTGGAGTTGAAATTGTGTATAGAATAAAAGAAATGGACAACAAGGAGTCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGAAACCAAGTCCCGAGGAAGGTTTTGCTGATCTTTCAAGCGATGTAGTTAAATACTGTGGGGGGTTGCCACTAGCTCTTCAAGTAATTGGGTCCTTTTTGTTGACTAGGAGGAGGGTAACAGTGTGGAAGAGTGTACTGGAGAAACTCAAAATGATTCCCAATAAAAAAGTTATGGAGAAGCTTAGAATAAGTTTTGACGGTTTAAGTGATGATGTTAAAGAAATATTCCTTGACATAGCGTTCTTCTTTATTGGAATGGAACAAGATGATTTTATTGAGATATTAAATGACTGCGGTCATTTTGCAGAAATTGGAATAAGTGTCCTCGTACAACAATGCCTTATAACTATTGATAGGAAGAACAGGATCAGAATGCATGATTTGCTACTAGACATGGGAAAAGAAATCGTCCGCGAGAATTCAGCTGAAGAGGGCAAGGAGCCTAGTAGATTATGTCGCTACAAGGATGTGGATTTTCTATTATCCAAAGATACTGTAAGTCCTTTATGCATATATTGTTTTTGTTTCTAA 3147 0.3947 MEDSFSQEDRLNPNPRIHDVFLSFRGEDTRASFTSHLYSALQNAGIKVFRDDDSLPRGDQISYSLLKAIEESQISVIVFSPNYADSRWCLDELNKIIKCHRTIGQVVLPVFYGVDPSEVRRQTGEFGKKFLNLKNTMPMDEDNMLLNNLMPRWKRWREALREAGGIAGFVVLNSRNESEIIENIVENVTSLLDKTDMFIADNPVGVESRVQDMIQLLDNQQSNDVLLLGVWGMGGIGKTTIAKAIYNKIGRNFQGRCFLANIREAGEQDAGQVHLQEQLLKKILKDRLCSKRVLLVLDDVNKLDQLNALCGSREWFGSGSRIIITTRDQHILRGSRVDQVYIMKEMDERESIELFSWNAFKQASPKEDFAEISRNVVEYSGGLPLALQVLGSYLFDRVVTEWKSVLEKLRTIPNDQVQKKLRISYDGLNDDKEKDIFLDIACFLIGMDRGDAIQILDGCKLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDAKIYDVFLSFRGEDSRAKFISHLYASLQNAGINVFRDDDEIQRGDTISVSLLGAIRSSRISIVVFSKYYANSKWCMLELENIMEIRRTMGMVVVPVFYEVDPSDVRHQRGDFGKAFEDLIAKTSVDKFMVKNWRTALLEVGGMAGLVIINSRNESEDIMKVVEDVTDLLGKTDIIVAEHPVGVEARVQNVIQLLKSQQSKDPLFLGIWGMGGLGKTTIAKAVYNRIRREFETKSFLLNVREVCEQNNGIVSLQQKLLSDIYKTTKIKIDTVEMGKEELKRRLSQKTIFLVLDDVNDKEQLDALCGSREWFGYGSRIITTRDENIVKKEFGVEIVYRIKEMDNKESLELFSWHAFKKPSPEEGFADLSSDVVKYCGGLPLALQVIGSFLLTRRRVTVWKSVLEKLKMIPNKKVMEKLRISFDGLSDDVKEIFLDIAFFFIGMEQDDFIEILNDCGHFAEIGISVLVQQCLITIDRKNRIRMHDLLLDMGKEIVRENSAEEGKEPSRLCRYKDVDFLLSKDTVSPLCIYCFCF* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3287 1048 SUPERFAMILY "Winged helix" DNA-binding domain 416 518 IPR036390 -
Lja3g3287 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 169 IPR035897 -
Lja3g3287 1048 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 529 1037 - -
Lja3g3287 1048 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 26 518 - -
Lja3g3287 1048 Gene3D - 516 693 IPR035897 -
Lja3g3287 1048 Pfam TIR domain 18 191 IPR000157 GO:0007165
Lja3g3287 1048 Pfam TIR domain 521 683 IPR000157 GO:0007165
Lja3g3287 1048 Gene3D - 190 341 IPR027417 -
Lja3g3287 1048 ProSiteProfiles TIR domain profile. 519 686 IPR000157 GO:0007165
Lja3g3287 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 529 1037 IPR044974 GO:0006952
Lja3g3287 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 518 IPR044974 GO:0006952
Lja3g3287 1048 Gene3D - 345 429 IPR042197 -
Lja3g3287 1048 Gene3D - 856 941 IPR042197 -
Lja3g3287 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 440 IPR027417 -
Lja3g3287 1048 SUPERFAMILY "Winged helix" DNA-binding domain 928 1029 IPR036390 -
Lja3g3287 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 516 662 IPR035897 -
Lja3g3287 1048 Pfam NB-ARC domain 701 925 IPR002182 GO:0043531
Lja3g3287 1048 Pfam NB-ARC domain 207 422 IPR002182 GO:0043531
Lja3g3287 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 691 951 IPR027417 -
Lja3g3287 1048 SMART till_3 520 660 IPR000157 GO:0007165
Lja3g3287 1048 SMART till_3 17 166 IPR000157 GO:0007165
Lja3g3287 1048 Gene3D - 16 189 IPR035897 -
Lja3g3287 1048 CDD AAA 204 328 - -
Lja3g3287 1048 ProSiteProfiles TIR domain profile. 16 192 IPR000157 GO:0007165
Lja3g3287 1048 PRINTS Disease resistance protein signature 227 242 - -
Lja3g3287 1048 PRINTS Disease resistance protein signature 287 301 - -
Lja3g3287 1048 PRINTS Disease resistance protein signature 380 394 - -
Lja3g3287 1048 SMART AAA_5 718 856 IPR003593 -
Lja3g3287 1048 SMART AAA_5 224 347 IPR003593 -
Lja3g3287 1048 Gene3D - 694 849 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3287 Lja-Chr3 64251187 64263240 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3287 204 513 WRKY Transcription Factor Family AT5G45050 37.771 4.00e-60 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3287 - - aprc:113850911 1268.83