LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3285	ATGGACCTAAATGATGTAATATCGAAGTATACATCGCCAACAGAATTTGCAATACGTGTTCTTCAAGACAAAAGCCTTGTAACTCTTGATGAGAACAACAAGCTTGGAATACACGTTCTGCTGCAACAAATGGGAAGAGAAATCCAAAGGGAGGAGTCGAAGCAAGTAGCTGATCAGGCAAAGATCTATGATGTGTTCTTGAGTTTCAGAGGGGAAGACAACCGTGCAAAATTCATTTCACATCTCTACGCCTCTCTTCAAAATGCAGGGATTAATGTTTTCAGAGATGATGATGAGATTCAGCGAGGAGATACAATCTCCGTCTCACTGCTGGGAGCTATCAGAAGTTCTAGAATTTCTATCGTTGTTTTTTCAAAATATTATGCTAATTCTAAATGGTGTATGCTAGAGTTGGAGAACATTATGGAAATTCGCAGAACCATGGGTATGGTGGTTGTGCCAGTGTTCTATGAAGTAGATCCCTCAGATGTACGCCATCAGAGAGGTGATTTTGGAAAAGCTTTTGAAGATCTTATAGCAAAAACCTCGGTGGATAAATTCATGGTGAAGAATTGGAGGACAGCACTCCTTGAAGTTGGTGGCATGGCAGGTCTTGTCATCATAAATTCCAGGAACGAAAGTGAGGATATCATGAAAGTAGTTGAAGATGTTACTGATTTACTAGGCAAGACAGACATTATCGTTGCTGAGCACCCAGTGGGGGTGGAAGCTCGCGTTCAAAATGTGATTCAACTATTAAAAAGCCAGCAATCCAAAGATCCTCTATTCCTTGGGATATGGGGGATGGGGGGGCTGGGTAAAACAACTATTGCCAAAGCCGTGTATAATCGAATTCGTCGTGAATTTGAGACTAAGAGCTTCCTCCTAAATAAGCTTCTTTCTGATATCTACAAAACAACGAAGATAAAGATAGATACAGTTGAAATGGGAAAAGAAGAACTGAAGAGAAGACTCAGTCAAAAGACAATATTTCTTGTGCTTGACGATGTGAATGATAAAGAACAATTGGATGCATTGTGTGGAAGTCGTGAATGGTTTGGTTACGGAAGTAGAATAATCACAACTAGAGATGAAAATATAGTTAAAAAGGAGTTTGGAGTTGAAATTGTGTATAGAATAAAAGAAATGGACAACAAGGAGTCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGAAACCAAGTCCCGAGGAAGGTTTTGCTGATCTTTCAAGCGATGTAGTTAAATACTGTGGGGGGTTGCCACTAGCTCTTCAAGTAATTGGGTCCTTTTTGTTGACTAGGAGGAGGGTAACAGTGTGGAAGAGTGTACTGGAGAAACTCAAAATGATTCCCAATAAAAAAGTTATGGAGAAGCTTAGAATAAGTTTTGACGGTTTAAGTGATGATGTTAAAGAAATATTCCTTGACATAGCGTTCTTCTTTATTGGAATGGAACAAGATGATTTTATTGAGATATTAAATGACTGCGGTCATTTTGCAGAAATTGGAATAAGTGTCCTCGTACAACAATGCCTTATAACTATTGATAGGAAGAACAGGATCAGAATGCATGATTTGCTACTAGACATGGGAAAAGAAATCGTCCGCGAGAATTCAGCTGAAGAGGGCAAGGAGCCTAGTAGATTATGTCGCTACAAGGATGTGGATTTTCTATTATCCAAAGATACTGTAAGTCCTTTATGCATATATTGTTTTTGTTTCTAA	1725	0.3884	MDLNDVISKYTSPTEFAIRVLQDKSLVTLDENNKLGIHVLLQQMGREIQREESKQVADQAKIYDVFLSFRGEDNRAKFISHLYASLQNAGINVFRDDDEIQRGDTISVSLLGAIRSSRISIVVFSKYYANSKWCMLELENIMEIRRTMGMVVVPVFYEVDPSDVRHQRGDFGKAFEDLIAKTSVDKFMVKNWRTALLEVGGMAGLVIINSRNESEDIMKVVEDVTDLLGKTDIIVAEHPVGVEARVQNVIQLLKSQQSKDPLFLGIWGMGGLGKTTIAKAVYNRIRREFETKSFLLNKLLSDIYKTTKIKIDTVEMGKEELKRRLSQKTIFLVLDDVNDKEQLDALCGSREWFGYGSRIITTRDENIVKKEFGVEIVYRIKEMDNKESLELFSWHAFKKPSPEEGFADLSSDVVKYCGGLPLALQVIGSFLLTRRRVTVWKSVLEKLKMIPNKKVMEKLRISFDGLSDDVKEIFLDIAFFFIGMEQDDFIEILNDCGHFAEIGISVLVQQCLITIDRKNRIRMHDLLLDMGKEIVRENSAEEGKEPSRLCRYKDVDFLLSKDTVSPLCIYCFCF*	575

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3285	574	Gene3D	-	229	373	IPR027417	-
	Lja3g3285	574	PRINTS	Disease resistance protein signature	417	431	-	-
	Lja3g3285	574	PRINTS	Disease resistance protein signature	324	338	-	-
	Lja3g3285	574	PRINTS	Disease resistance protein signature	263	278	-	-
	Lja3g3285	574	SUPERFAMILY	Toll/Interleukin receptor TIR domain	57	204	IPR035897	-
	Lja3g3285	574	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	233	477	IPR027417	-
	Lja3g3285	574	Pfam	NB-ARC domain	243	451	IPR002182	GO:0043531
	Lja3g3285	574	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	71	563	IPR044974	GO:0006952
	Lja3g3285	574	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	17	52	IPR044974	GO:0006952
	Lja3g3285	574	SMART	till_3	62	202	IPR000157	GO:0007165

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3285	Lja-Chr3	64209819	64212774	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3285	42	549	WRKY Transcription Factor Family	AT4G12020	29.356	9.50e-52	190

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3285	-		-	lja:Lj0g3v0297389.2	825.469

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