Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3285 ATGGACCTAAATGATGTAATATCGAAGTATACATCGCCAACAGAATTTGCAATACGTGTTCTTCAAGACAAAAGCCTTGTAACTCTTGATGAGAACAACAAGCTTGGAATACACGTTCTGCTGCAACAAATGGGAAGAGAAATCCAAAGGGAGGAGTCGAAGCAAGTAGCTGATCAGGCAAAGATCTATGATGTGTTCTTGAGTTTCAGAGGGGAAGACAACCGTGCAAAATTCATTTCACATCTCTACGCCTCTCTTCAAAATGCAGGGATTAATGTTTTCAGAGATGATGATGAGATTCAGCGAGGAGATACAATCTCCGTCTCACTGCTGGGAGCTATCAGAAGTTCTAGAATTTCTATCGTTGTTTTTTCAAAATATTATGCTAATTCTAAATGGTGTATGCTAGAGTTGGAGAACATTATGGAAATTCGCAGAACCATGGGTATGGTGGTTGTGCCAGTGTTCTATGAAGTAGATCCCTCAGATGTACGCCATCAGAGAGGTGATTTTGGAAAAGCTTTTGAAGATCTTATAGCAAAAACCTCGGTGGATAAATTCATGGTGAAGAATTGGAGGACAGCACTCCTTGAAGTTGGTGGCATGGCAGGTCTTGTCATCATAAATTCCAGGAACGAAAGTGAGGATATCATGAAAGTAGTTGAAGATGTTACTGATTTACTAGGCAAGACAGACATTATCGTTGCTGAGCACCCAGTGGGGGTGGAAGCTCGCGTTCAAAATGTGATTCAACTATTAAAAAGCCAGCAATCCAAAGATCCTCTATTCCTTGGGATATGGGGGATGGGGGGGCTGGGTAAAACAACTATTGCCAAAGCCGTGTATAATCGAATTCGTCGTGAATTTGAGACTAAGAGCTTCCTCCTAAATAAGCTTCTTTCTGATATCTACAAAACAACGAAGATAAAGATAGATACAGTTGAAATGGGAAAAGAAGAACTGAAGAGAAGACTCAGTCAAAAGACAATATTTCTTGTGCTTGACGATGTGAATGATAAAGAACAATTGGATGCATTGTGTGGAAGTCGTGAATGGTTTGGTTACGGAAGTAGAATAATCACAACTAGAGATGAAAATATAGTTAAAAAGGAGTTTGGAGTTGAAATTGTGTATAGAATAAAAGAAATGGACAACAAGGAGTCTCTTGAGCTTTTTAGTTGGCATGCATTTAAGAAACCAAGTCCCGAGGAAGGTTTTGCTGATCTTTCAAGCGATGTAGTTAAATACTGTGGGGGGTTGCCACTAGCTCTTCAAGTAATTGGGTCCTTTTTGTTGACTAGGAGGAGGGTAACAGTGTGGAAGAGTGTACTGGAGAAACTCAAAATGATTCCCAATAAAAAAGTTATGGAGAAGCTTAGAATAAGTTTTGACGGTTTAAGTGATGATGTTAAAGAAATATTCCTTGACATAGCGTTCTTCTTTATTGGAATGGAACAAGATGATTTTATTGAGATATTAAATGACTGCGGTCATTTTGCAGAAATTGGAATAAGTGTCCTCGTACAACAATGCCTTATAACTATTGATAGGAAGAACAGGATCAGAATGCATGATTTGCTACTAGACATGGGAAAAGAAATCGTCCGCGAGAATTCAGCTGAAGAGGGCAAGGAGCCTAGTAGATTATGTCGCTACAAGGATGTGGATTTTCTATTATCCAAAGATACTGTAAGTCCTTTATGCATATATTGTTTTTGTTTCTAA 1725 0.3884 MDLNDVISKYTSPTEFAIRVLQDKSLVTLDENNKLGIHVLLQQMGREIQREESKQVADQAKIYDVFLSFRGEDNRAKFISHLYASLQNAGINVFRDDDEIQRGDTISVSLLGAIRSSRISIVVFSKYYANSKWCMLELENIMEIRRTMGMVVVPVFYEVDPSDVRHQRGDFGKAFEDLIAKTSVDKFMVKNWRTALLEVGGMAGLVIINSRNESEDIMKVVEDVTDLLGKTDIIVAEHPVGVEARVQNVIQLLKSQQSKDPLFLGIWGMGGLGKTTIAKAVYNRIRREFETKSFLLNKLLSDIYKTTKIKIDTVEMGKEELKRRLSQKTIFLVLDDVNDKEQLDALCGSREWFGYGSRIITTRDENIVKKEFGVEIVYRIKEMDNKESLELFSWHAFKKPSPEEGFADLSSDVVKYCGGLPLALQVIGSFLLTRRRVTVWKSVLEKLKMIPNKKVMEKLRISFDGLSDDVKEIFLDIAFFFIGMEQDDFIEILNDCGHFAEIGISVLVQQCLITIDRKNRIRMHDLLLDMGKEIVRENSAEEGKEPSRLCRYKDVDFLLSKDTVSPLCIYCFCF* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3285 574 Gene3D - 229 373 IPR027417 -
Lja3g3285 574 PRINTS Disease resistance protein signature 417 431 - -
Lja3g3285 574 PRINTS Disease resistance protein signature 324 338 - -
Lja3g3285 574 PRINTS Disease resistance protein signature 263 278 - -
Lja3g3285 574 SUPERFAMILY Toll/Interleukin receptor TIR domain 57 204 IPR035897 -
Lja3g3285 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 477 IPR027417 -
Lja3g3285 574 Pfam NB-ARC domain 243 451 IPR002182 GO:0043531
Lja3g3285 574 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71 563 IPR044974 GO:0006952
Lja3g3285 574 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 52 IPR044974 GO:0006952
Lja3g3285 574 SMART till_3 62 202 IPR000157 GO:0007165
Lja3g3285 574 ProSiteProfiles TIR domain profile. 61 228 IPR000157 GO:0007165
Lja3g3285 574 SUPERFAMILY "Winged helix" DNA-binding domain 454 555 IPR036390 -
Lja3g3285 574 Gene3D - 60 228 IPR035897 -
Lja3g3285 574 Pfam TIR domain 63 225 IPR000157 GO:0007165
Lja3g3285 574 Gene3D - 382 467 IPR042197 -
Lja3g3285 574 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 71 563 - -
Lja3g3285 574 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 17 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3285 Lja-Chr3 64209819 64212774 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3285 42 549 WRKY Transcription Factor Family AT4G12020 29.356 9.50e-52 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3285 - - lja:Lj0g3v0297389.2 825.469