LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3279	ATGGCGGCTGACCCATATTCCCATCGGAGCAATTCGCCATCTGAGTACTTCAATTGGGATGATTTGTTGGATCAGAATCAAACACTGCGGCCTAAATGGGTTTCAACTTCTCCTCCTCCCCGATCTCCACCTCCACCTCCAGTTCGAGTTGTAAATGAAGTGTTTTGGGAGCACTTCTTAACGGAAAGGCCCGGAACTAGTGATGAGTTGTTGAGAATCCACGATGTGTTCTTGAGTTTCAGAGGGGGGGACACGCGTGCTTCATTCACTTCACATCTCTATGCCGCTCTTCAAAACGCAGGGATCAAAGTTTTCAGGGACGACGATTCCCTCCCAAGGGGAGATCAAATTTCTACCTCACTGTTGCAAGCAATTGAAGAGTCTCATATTTCAATTGTTGTTTTCTCGACAAATTATGCGGATTCGCGGTGGTGTCTGGATGAGTTGGAGAAAATAATGGACTGTCACAGAACCATAGGCCAGGTGGTTTTGCCGGTGTTCTACGATGTAAATCCCTCTGAAGTGCGGCACCAAACTGGTGAGTTTGGGAAAAAATTTCACAATCATATAAAGGGAGACAATTTGTTGCTATATCCTCTGGGTTCCCGTTGGAAGAGTTGGAGGGAGGCGCTTCGTGAGGCTGGGGGTATTGCAGGGTTTGTTGTTTTAAATTCCAGGAATGAAAGTGAGGCTATTGAGAATATTGTTGAAAATATTACTAGTTTGCTTGACAAGACAGACATGTTCATTGCTGATAATCCAGTGGGAGTTGAATCTCGAGTGCAAGATATGATTCTACTACTAGACAACCAAGAATCAAATGATGTTTTATTACTTGGGGTTAGGGGTATGGGAGGGATTGGTAAAACAACCATTGCAAAAGCTATTTACAATGAGATTGGCCGCAATTTTGAGGGGAGGAGCTTCCTTGCAAATATTAGGGAAGTCTGGGAGCAAGATGCTGGACAAGTGCATTTACAAGAACAACTTCTGTTTGATATCTTCAAAAAAACAACAAAGATACATAGCATTGAATCAGGAAAAAATATATTAAAGGATAGACTTTGCAGTAAAAGAGTACTTCTTGTACTTGACGATGTGAATAAATTGGACCAACTGAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGATCAGCATATACTGAGAGGGAATAGAGTTAACCAAGTTTACATAATGAAAGAAATGGATGAAAGTGAATCCACTGACCTTTTTAGTTGGCATGCATTCAAGCAAGCGAGTCCTAGGGAAGATTTTGCTGAACTTTCAAGAAACGTAATTGAGTATTCTGGGGGATTGCCACTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGACAGGGGGGTAACAGAATGGAAGAGTGTATTGGAGAAACTCAAAACAATCCCCAATGATCAAGTACAGAAAAAGTTAAGAATAAGCTATGATGGTTTAAGTGATGATAAAGAGAAAGATATATTCCTTGACATAGCATGTTTCTTTATTGGGATGGACAGAAATGAAGCTATACAAATATTAAATGGCTGCAAACTTTTTGCAGAAATTGGAATAAGTGTCCTTGTTGAGAGAAGTCTTTTAACTGTTGATAATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCATTCGTGAGAAATCACCAAAGGAGCCTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTTATCGAAGTATTATCAGACCAAACTGGAACTAAAGCTATTGAAGGACTGGCTTTGAAGTTGCCAGTTAATAATACAAAATGTTTCAGCACTGAAGCATTTGAGAAGATGAAGAAACTCAGATTGCTTCAACTTGCTGGTGTAAAACTTGAAGGAGATTTTAAATATCTTTCAAGAAATCTGAGATGGCTGTGTTGGCGGGGATTTCCGTTATCTTTCCTGCCTAAAAACCTTCGTCAAGAAAATTTAGTTTCAATCATGTTAGAAAACAGCAATATCAAACATGGATGGAAAGATGGCCAGAGGATGGAGATGCTGAAAATTTTGAATCTTAGTCATTCTCAGCATTTGACACAGACCCCAGACTTTTCATGTATGCCTAATCTTGAAAAGCTTGTACTTAGAGATTGTACAAGCCTGTCTGAGGTTTCCCATAGCATTGGATATCTCAATAAAGTTTTACTGATAAATTTGAAAGGCTGTATTAGCCTTCGTAACCTTCCAAGAAGCATCTATAAGTTGAAATCTCTGAAAACTCTCATCCTTTCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACGTGGAACAGATGGAATCTTTGACAACCCTGATTGCAGATAACACTGCAATAACAAGAGTCCCCTATTCATTAGTCAGGTCAAAAAGCATTGGATATATTTCTTTGTGCGGTCATGAAGGACTCTCTCGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAAATAACCTCTCATCCTTAGTTCAAACATCTGCAGGCATGTCATCTCTTGTTTCTTTAAATGTATCAAGTAGTAGTTCCCAGGGACTATCATCTATTCCCGTGGACCTCCCAAAGCTTCAAAGTCTGTGGATGGAGTCTGGCTCAGAACTTCAACTTTCTCGAGATGCAGAAAGAATTTTGGGTGCCTTGTATGCTATGAATTCTTCTAAAGAATTGGAATCAACTGCAACTACATCAGAAATATCAAATAAGGAAACTTCTGGCTTGATGCAATGCAGTTGTCAAGTGCTTGATTCAGGATCAAAAGATTCCTTGAAATCTCTTTTATTTCAAATGGGAATGAATTGCCAAGCCACCAGTATTCTGAAAGAGAGCATTTTAGAGAATATGGCTGTTAGAGGGTCTGGTTTGCTCCCCGGAGACAATTATCCAGATTGGTCAACCTTCAACTCGGAAGGTTGTTCTGTGATTTTTGAAGTCCCTCAAGTGAACGGGCGCAGTTTGAAGACAATAATTTGTGTTGTCCATTCTTCTACCACAGATGACATAACATCAGATGGCCTTCAAAATGTGTTGGTGATAAATTGCACAAAGAACACAATTCAGCTCTATAAGAGGAATGCATTAGCCTCCTTTGAAGATGAAGAGTGGCAGAGAGTAGTATCAAATATTGAACCGGGTAACAAAGTAAAGATGGTGGTTGTTTTTGAGAACGGATTCACTGTGAAGAAGACAACAGTTTATCTTGTATATGATGAAGAGAAAATGGAACCTTGCAATGCACCATATAAGAATGAAATTGTTTTTGGTGGTGATGAAATTGAATCCGCTGTCAGGAAAAGCTCTGCTCAAGTGGAGTCAGTGAATGACTTGAAACAAAAACAAAAGAGAAGGAAATTCCAATAA	3411	0.3981	MAADPYSHRSNSPSEYFNWDDLLDQNQTLRPKWVSTSPPPRSPPPPPVRVVNEVFWEHFLTERPGTSDELLRIHDVFLSFRGGDTRASFTSHLYAALQNAGIKVFRDDDSLPRGDQISTSLLQAIEESHISIVVFSTNYADSRWCLDELEKIMDCHRTIGQVVLPVFYDVNPSEVRHQTGEFGKKFHNHIKGDNLLLYPLGSRWKSWREALREAGGIAGFVVLNSRNESEAIENIVENITSLLDKTDMFIADNPVGVESRVQDMILLLDNQESNDVLLLGVRGMGGIGKTTIAKAIYNEIGRNFEGRSFLANIREVWEQDAGQVHLQEQLLFDIFKKTTKIHSIESGKNILKDRLCSKRVLLVLDDVNKLDQLNALCGSREWFGSGSRIIITTRDQHILRGNRVNQVYIMKEMDESESTDLFSWHAFKQASPREDFAELSRNVIEYSGGLPLALEVLGSYLFDRGVTEWKSVLEKLKTIPNDQVQKKLRISYDGLSDDKEKDIFLDIACFFIGMDRNEAIQILNGCKLFAEIGISVLVERSLLTVDNKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVIEVLSDQTGTKAIEGLALKLPVNNTKCFSTEAFEKMKKLRLLQLAGVKLEGDFKYLSRNLRWLCWRGFPLSFLPKNLRQENLVSIMLENSNIKHGWKDGQRMEMLKILNLSHSQHLTQTPDFSCMPNLEKLVLRDCTSLSEVSHSIGYLNKVLLINLKGCISLRNLPRSIYKLKSLKTLILSGCLMIDKLEEDVEQMESLTTLIADNTAITRVPYSLVRSKSIGYISLCGHEGLSRDVFPSIIWSWMSPTNNLSSLVQTSAGMSSLVSLNVSSSSSQGLSSIPVDLPKLQSLWMESGSELQLSRDAERILGALYAMNSSKELESTATTSEISNKETSGLMQCSCQVLDSGSKDSLKSLLFQMGMNCQATSILKESILENMAVRGSGLLPGDNYPDWSTFNSEGCSVIFEVPQVNGRSLKTIICVVHSSTTDDITSDGLQNVLVINCTKNTIQLYKRNALASFEDEEWQRVVSNIEPGNKVKMVVVFENGFTVKKTTVYLVYDEEKMEPCNAPYKNEIVFGGDEIESAVRKSSAQVESVNDLKQKQKRRKFQ*	1137

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3279	1136	Gene3D	-	247	407	IPR027417	-
	Lja3g3279	1136	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	79	1085	IPR044974	GO:0006952
	Lja3g3279	1136	PANTHER	RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED	79	1085	-	-
	Lja3g3279	1136	SUPERFAMILY	L domain-like	553	880	-	-
	Lja3g3279	1136	ProSiteProfiles	TIR domain profile.	72	243	IPR000157	GO:0007165
	Lja3g3279	1136	Gene3D	-	71	246	IPR035897	-
	Lja3g3279	1136	SMART	till_3	73	217	IPR000157	GO:0007165
	Lja3g3279	1136	CDD	AAA	255	395	-	-
	Lja3g3279	1136	PRINTS	Disease resistance protein signature	278	293	-	-
	Lja3g3279	1136	PRINTS	Disease resistance protein signature	685	701	-	-
	Lja3g3279	1136	PRINTS	Disease resistance protein signature	354	368	-	-
	Lja3g3279	1136	PRINTS	Disease resistance protein signature	447	461	-	-
	Lja3g3279	1136	SMART	AAA_5	275	414	IPR003593	-
	Lja3g3279	1136	Gene3D	-	412	496	IPR042197	-
	Lja3g3279	1136	SUPERFAMILY	Toll/Interleukin receptor TIR domain	72	220	IPR035897	-
	Lja3g3279	1136	Gene3D	Ribonuclease Inhibitor	599	894	IPR032675	-
	Lja3g3279	1136	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	247	507	IPR027417	-
	Lja3g3279	1136	Pfam	NB-ARC domain	259	490	IPR002182	GO:0043531
	Lja3g3279	1136	Pfam	TIR domain	74	242	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3279	Lja-Chr3	64098359	64105857	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3279	74	802	WRKY Transcription Factor Family	AT4G12020	33.067	9.33e-90	316

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3279	-		-	lja:Lj0g3v0331109.1	1628.99