Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3278 ATGTTTAATTTCAATGATCCTGGGTTCGTTAACTATCCGGATTCTAGAAGAAGGATCCACAATGTGTTTTTGAGTTTCAGAGGGGAGGACACGCGAACTTCCTTCACTTCACATCTTTACACTGCTCTTCAGAACGCTGGAATCATCGTTTTCAAGGACGACGACGATTCTATTTCTAGTCCCAGGGGAGCATTCATTTCAACCTCACTGCTGCGAGCAATTGAAGAGTCTCAGATTTCAATCATTGTTTTCTCGAGAAATTATGCAGATTCACGGTGGTGTATGGAAGAGTTGAAGAAAATAATGGAATGTCACAGAACCATTGGACAGGTGGTTTTGCCGGTGTTCTACGACGTTGATCCCTCTGAAGTGCGGCGTCAAACTGGTCAGTTTGGGAAAAGTTTTCAGAATCTGATAAACAGAACTTCAATGTTTCACAATCCCTCAGAAGACGTTTTGCTTGATCATCGGGTGTCTGGTTGGAGAGAGGCGCTCCGTGAGGCTGGTGGCATTTCAGGGTTTGTAGTCTTAAATTCCAGGAATGAGAGTGAAACTATCGAGAATGTTGTTGAAAATGTTACAAGTTTGCTTGACAAGACAGACTTGTTTATTGCTGATAATCCGGTGGGAGTTGAATCTCGAATGCGAGATATAATTCAACTGCTAGACAGCCAAAACTCAAATGATGTTCTACTACTTGGGGTGTGGGGTATGGGTGGAGTTGGTAAAACAACCATTGCAAAAGCTATTTACAATAAAATTGGCCGCAATTTTGAGGGTAGGAGCTTCCTTGCAAATATTAGGGAAGTTTGGGAGCAAGATGCTGGACAAGTGCATTTGCAAGGACAACTTCTGTTTGATATGTTCAAAAAAACGACAGCCAAGATACATAGCATTGAATCTGGACAGCATATACTGAAGGAAAGACTTTGCCATAAACGAGTACTTCTTGTACTTGACGAAGTGAATAAATTGGATCAACTGAATGCTTTGTGTGGAAGTCGTACATGGTTTGGTTCAGGTAGTAGAATAATCATCACAACCAGAGATAAGCATATACTCAGGGGGAACAGAGTTGATCAAGTTTACATAATGAAAGAAATGGATGAAAGTCAATCTGTTGAGCTTTTTAGTTGGCATGCATTCAATCAAGCTAACCCTACAGAAGATTTTGCTGAAATTTCTAGAAAAGTAGTTCAGTATTCTGGGGGATTGCCACTAGCTCTTGAAGTCCTTGGATCATATTTGTTTGATAGGGGGGTAACAGAATGGAAGAATGTACTGGAGAAACTCAAACGAATACCCAATGATCAAGTACAGAAGAAGTTAAAAATAAGTTATGATGATTTAAATGATGATACAGAGAAAGAGATATTCCTTGACATAGCATGTTTCTTTATTGGGATGGACAGAAACGATGTTATACGCATATTGAATGGCTGTGGACTTTTTGCAGAAATTGGAATAAATGTCCTTGTTGAGAGAAGTCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAGATCATTCGTGAGAAATCACCAAAGGAGCCCGAGGAGCGCAGTAGGTTATGGTTTCACGAGGATGTTCTTGATGTATTATCACAACAAACTGGAACAAAAGCTATAGAGGGACTGTCTTTTAAGTTCCCAAGTAGTAATACAAAATGTTTCAGCACTAAAGCATTTAAGAAGATGAAGAGACTCAGATTGCTTCAACTTGCTGGTGTCCAACTTGTAGGAGATTTTGAAAATCTTTCAAGAAATATGAGATGGCTGTGTTGGCATGGATTTCCTTTACGATTCATACCTAAAAACTTTTATCAAGGAAATTTGGTTTCCATCGAGTTAGAAAACAGCAATATCAAACTTGTCTGGAAAGAGGCCCAGAGGATGGAGAAGCTGACAATTCTGAATCTTAGTCATTCTCAGCATTTGACACAGACCCCAGACTTTTCAAATATGCCTAATCTTGAAAAGCTTGTACTTATAGATTGTCCGAGCCTGTCTGAGGTTTCCCATAGCATTGGACATCTCAATAAAGTTGTACTGATAAATTTGAAAGACTGTGTTAGCCTTTGTAACCTTCCAAGAAGCATCTATAAGTTGAAATCTCTGAAAACCCTTAATCTTTCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACTTGGAACAGATGGAATCTTTGACAACCCTGATTGCAGACAACACTGCAATAACAAGAGTTCCCTATTCATTAGTAAGGTCAAAAAGCATTGGATATATTTCTTTGTGCAGCCATGAAGGATTCTCACGTGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAAATAACCTCTCATCCCTAGTTCAAACATCTGCAAACATGTCATCTCTTGTTTCTTTAGATGTGTTAAGTAGTGGTTCTGCCGAATTATCAACTATTCCCATGGACCTTCCTAAGCTTCGAAGTCTGTGGATTGAGTGCAGCTCAGAACTTCAACTTTTTCGAGATGAAAAAAGAATTTTGGATTCTTTATATGCCTGTAATTCTTCTGTAGAATTTGAATCAACAGCAACTACGTCAGAAGTATCAAATATGAGAACTTCTCCTTTGATGGAATCCAACTGTCTAGTGCATGATTCAGGATCAAAAGGTTCATTGAAATCTCTTTTATTTCAAATGGGAATGAATTGCCATGCCACCAGTATTCTGAAAGAGAGCATTTTACAGAATATGACTGTTGGAGGGTCTGGTGTTAACTTTCTCCCAGGAGACAATTATCCCCATTGGTTAACCTTCAATTGCGAAGGTTCTTCTGTAAGTTTTGAAGTCCCTCGAGTGAATGGGCGTAGTTTGAAGACAATGATGTGTGTTGTCCATTCTTCTACCACAGATGACACAACATTAGATCGCCTTAAAAATGTGCTGGTGATAAATTACACAAAGACAAGTATTCAGCTCTATAAGAGGGAAACATTAGCCTCCTTTGAAGGTGAAGAGTGGCAGAGAGTAGTATCAAATATTGAACCAGGTAACAAAGTGAAGGTGGTGGTTGTTTTTGAGAACAGATTCATTGTGAAAAAGACAGCAATTTATCTCATATATGATGATGAACCAATTGAGGAGAAAATGGAACGTTGCTATGCACCATATGGGAATGAAATTGTTTCTAGTTGGGATGGAAATGGATCTGCTGTTACGAGGTTCTCTGCTCAAGTGGAGTCAGGATGCAACCATAAACCACAGCTCAAACCAATCTTGGGCTCCAAGATTAACCGGTTAGGATTATTTGTTGCTCATGCACCCGAACTTCATGCACTCATTTTTCTCTTAGCAGCAATTTTCCAGCACATCTCCTCAATAAGATTACTCGTTTTTCTTCATATATAG 3414 0.3919 MFNFNDPGFVNYPDSRRRIHNVFLSFRGEDTRTSFTSHLYTALQNAGIIVFKDDDDSISSPRGAFISTSLLRAIEESQISIIVFSRNYADSRWCMEELKKIMECHRTIGQVVLPVFYDVDPSEVRRQTGQFGKSFQNLINRTSMFHNPSEDVLLDHRVSGWREALREAGGISGFVVLNSRNESETIENVVENVTSLLDKTDLFIADNPVGVESRMRDIIQLLDSQNSNDVLLLGVWGMGGVGKTTIAKAIYNKIGRNFEGRSFLANIREVWEQDAGQVHLQGQLLFDMFKKTTAKIHSIESGQHILKERLCHKRVLLVLDEVNKLDQLNALCGSRTWFGSGSRIIITTRDKHILRGNRVDQVYIMKEMDESQSVELFSWHAFNQANPTEDFAEISRKVVQYSGGLPLALEVLGSYLFDRGVTEWKNVLEKLKRIPNDQVQKKLKISYDDLNDDTEKEIFLDIACFFIGMDRNDVIRILNGCGLFAEIGINVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPKEPEERSRLWFHEDVLDVLSQQTGTKAIEGLSFKFPSSNTKCFSTKAFKKMKRLRLLQLAGVQLVGDFENLSRNMRWLCWHGFPLRFIPKNFYQGNLVSIELENSNIKLVWKEAQRMEKLTILNLSHSQHLTQTPDFSNMPNLEKLVLIDCPSLSEVSHSIGHLNKVVLINLKDCVSLCNLPRSIYKLKSLKTLNLSGCLMIDKLEEDLEQMESLTTLIADNTAITRVPYSLVRSKSIGYISLCSHEGFSRDVFPSIIWSWMSPTNNLSSLVQTSANMSSLVSLDVLSSGSAELSTIPMDLPKLRSLWIECSSELQLFRDEKRILDSLYACNSSVEFESTATTSEVSNMRTSPLMESNCLVHDSGSKGSLKSLLFQMGMNCHATSILKESILQNMTVGGSGVNFLPGDNYPHWLTFNCEGSSVSFEVPRVNGRSLKTMMCVVHSSTTDDTTLDRLKNVLVINYTKTSIQLYKRETLASFEGEEWQRVVSNIEPGNKVKVVVVFENRFIVKKTAIYLIYDDEPIEEKMERCYAPYGNEIVSSWDGNGSAVTRFSAQVESGCNHKPQLKPILGSKINRLGLFVAHAPELHALIFLLAAIFQHISSIRLLVFLHI* 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3278 1137 SMART AAA_5 229 369 IPR003593 -
Lja3g3278 1137 ProSiteProfiles TIR domain profile. 18 197 IPR000157 GO:0007165
Lja3g3278 1137 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 28 1043 - -
Lja3g3278 1137 CDD AAA 209 350 - -
Lja3g3278 1137 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 1043 IPR044974 GO:0006952
Lja3g3278 1137 PRINTS Disease resistance protein signature 232 247 - -
Lja3g3278 1137 PRINTS Disease resistance protein signature 711 727 - -
Lja3g3278 1137 PRINTS Disease resistance protein signature 402 416 - -
Lja3g3278 1137 PRINTS Disease resistance protein signature 309 323 - -
Lja3g3278 1137 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 174 IPR035897 -
Lja3g3278 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 462 IPR027417 -
Lja3g3278 1137 Gene3D Ribonuclease Inhibitor 559 883 IPR032675 -
Lja3g3278 1137 SUPERFAMILY L domain-like 508 836 - -
Lja3g3278 1137 Coils Coil 727 747 - -
Lja3g3278 1137 Pfam NB-ARC domain 212 448 IPR002182 GO:0043531
Lja3g3278 1137 Gene3D - 195 363 IPR027417 -
Lja3g3278 1137 Pfam TIR domain 20 195 IPR000157 GO:0007165
Lja3g3278 1137 Gene3D - 18 194 IPR035897 -
Lja3g3278 1137 SMART till_3 19 171 IPR000157 GO:0007165
Lja3g3278 1137 Gene3D - 367 451 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3278 Lja-Chr3 64049196 64061605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3278 12 757 WRKY Transcription Factor Family AT4G12020 31.477 1.16e-84 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3278 - - lja:Lj0g3v0331109.1 2098.17