Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3277 ATGGGAGGAATTGGTAAAACAACCATTGCAAAAGCTATTTACAATAAAATTGGCCGCAATTTTGAGGGTAGGTGCTTCCTTGCAAATATTAGGGAAGTTGGGGAGCAAGATGCCGGACAACTTTTTAGTTGGCATGCATTCAAGCAAGCGAGCCCTAGAGAAGATTTTGCTGAAATTTCTAGAAATGTAGTTGAGTACTCTGGGGGATTGCCACTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGATAGGGTGCTAACAGAATGGAAGAATGTACTGGAGAAGCTCAAAAGAATTCCCAATGATCAAGTACATAAGAAGTTAGAAATAAGCTACTATGGTTTAAAAGATGATACAGAGAAAGAGATATTCCTTCACATAGTGTGTTTCTTTATTGGGGTGGACAGAAATGATAGAAGTCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCACGATTTGCTGCGAGACATGGGAAGAGAAATCGTTCGTGAGAAATCGCCTAAGGAGCCTGAGGAGCGTAGCAGGTTATGGTTTGATGAGGATGTGATTGATGTATTATCAGATCAAACTGGGACAAAAGCTATTGAAGGACTGGCTTTGAAGGTGCCAAGTAATAATACAAAATATTTTAAATACCTTTCAAGAAGTATTAGATGGCTGTGTTGGCATGGATTTCCTTTATCATGCATGCCTAAAAAATTCTATCGAGGAAGTTTAGTTTCCATCGAGTTAGTAAACAGCAATGTCAAACGTGTGTGGGAAGAGGCCCAGGTAATAATTCTGAGTTTAGCTTTTCACATTTCATGA 813 0.3911 MGGIGKTTIAKAIYNKIGRNFEGRCFLANIREVGEQDAGQLFSWHAFKQASPREDFAEISRNVVEYSGGLPLALEVLGSYLFDRVLTEWKNVLEKLKRIPNDQVHKKLEISYYGLKDDTEKEIFLHIVCFFIGVDRNDRSLVTVDDKNKLGMHDLLRDMGREIVREKSPKEPEERSRLWFDEDVIDVLSDQTGTKAIEGLALKVPSNNTKYFKYLSRSIRWLCWHGFPLSCMPKKFYRGSLVSIELVNSNVKRVWEEAQVIILSLAFHIS* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3277 270 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 33 253 - -
Lja3g3277 270 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 1 27 - -
Lja3g3277 270 Gene3D - 33 116 IPR042197 -
Lja3g3277 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 127 IPR027417 -
Lja3g3277 270 Pfam NB-ARC domain 31 102 IPR002182 GO:0043531
Lja3g3277 270 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 253 IPR044974 GO:0006952
Lja3g3277 270 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 27 IPR044974 GO:0006952
Lja3g3277 270 SUPERFAMILY "Winged helix" DNA-binding domain 104 188 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3277 Lja-Chr3 64020568 64022036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3277 54 256 WRKY Transcription Factor Family AT4G12020 30.078 4.72e-24 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3277 - - lja:Lj0g3v0045059.1 345.125