Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3275 ATGGCGGCTGACCCATCTTCTCATCGGAGCAATTCGCCATCTCAGGACTTCAATTGGGATGATTTGTTGGATCAGTCTGAAACACTGCTGCACGATTGTGTTTCAACTTTTCATTCTCCTCCAGCTCCAGCTCCAGCTCCACCTCCAGCTCCAGCTCCAGCTCCACCTCCAACTGTAAATGAAGTGTTTTGGGAGCAGTTCTCAACGGAAAGGACCAGTTATGAGTTGTTGAGAATCCATGAAGTGTTCTTGAGTTTCAGAGGGGAGGATACTCGTGCTTCCTTCACTTCACATCTCTATGCCGCTCTTCAAAACGCCGGAGTCAACGTTTTCAGGGACGACGATTCCCTTCCAAGGGGAGATCAAATTACAAGTTCACTGCTGCAAGCAATCGAAGACTCTCAGATCTCAGTTATTGTTTTCTCAATCAATTATGCAAATTCGCGGTGGTGTATGGAAGAGTTGGTGAAAATAATGGACTGTCACAGAACCATAGGCCAGGTGGTTCTGCCGGTGTTCTACGGTGTCGATCCCTCTGAAGTGCGGCGCCAAACTGGTGAATTTGGAAACAAATTTCAGGATCTTACAAACAGAATTATTGCACTCGATAGATACGGCTTTGATCAGGTGCGAGTGCGACTAGATAATTGGGTGTCTGGTTGGAGGGTGGCGCTTTGTGAGGCCGGTGGCATTGCAGGGTTTGTTGTCTTAAATTCCAGGAATGAAAGTGAGGCTATTGAGAATATTGTTGAAAATGTTACTAGTTTGCTTGACAAGACAGACATGTTCATTGCTGATAATCCAGTGGGAGTTGAATCTCGAGTGCAAGATATGATTCAACTGCTAGACAACCAACAATCAAATGATGTTCTATTACTTGGGGTATGGGGTATGGGAGGAATTGGCAAGACGACCATTGCAAAAGCTATTTACAACAAAATTGGCCGCAATTTTGAGGGTAGGTGCTTCCTTGCAAATATTAGAGAAGTTGGGGAGCAAGATGCTGGACAAGTGCATTTACAAGAACAACTTCTCTTTGATATCTTCAAGAAAACAACCAAGGTACATAGCACTGAATCAGGAAAAAATATATTAAAGGATAGACTTTGCAGCAAAAGAGTACTTCTTGTACTTGACGATGTGAACAAATTGGACCAACTGAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGACCAGCATATACTGAGAGGGAGTAGAGTTGACCAAGTTTACATAATGAAACAAATGGATGAAAGTGAATCTATTGAGCTTTTTAGCTGGCATGCATTCAAGCAAGCGAGTCCTAGAGAAGATTTTTCTGAAATTTCAAGAAATGTTGTTGAGTATTCTGGGGGATTGCCACTAGCTGTTGAAGTCCTTGGGTCCTATTTGTTTGAAAGGGGGGTAACAGAATGGAAGAGTGTATTGGACAAACTCAAAACAATTCCCAATGATCAAGTACAGAAAAAGTTAAGAATAAGCTATGATGGTTTAAATGATGATAAAGAGAAAGATATATTCCTTGACATAGCTTGTTTCTTTATTGGGATGGACAGAAGTGATGCTATACAAATATTAAATGGCTGCAAACTTTTTGCAGAAATTGGAATTAGTGTCCTTGTTGAGAGAAGTCTTGTAACTGTTGATGATAAGAACAAGCTTGGAATGCATGATTTGCTGCGAGACATGGGAAGAGAAATCATTCGTGAGGTATCACCAAAGGAGCCTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTTATCGAAGTATTATCAGACCAAACCGGAACAAAAGCTATTGAGGGACTGGCTTTGAAGTTGCCAGTTAAAAATACAAAATGTTTCAGCACTGAAGCATTTGAGAAGATGAAGAAACTCAGATTGCTTCAACTTGCTGGTGTAAAACTTGAAGGAGATTTTAAATATCTTTCAAGAAATCTGAGATGGCTGTGTTGGCATGGATTTCCGTTACCTTTCCTACCTAAAAACCTTCGTCAAGAAAATTTAGTTTCCATCATGTTAGAAAACAACAATATCAAACATGTATGGAAAGATGGCCAGAGGATGGAGATGCTGAAAATTTTGAATCTTAGTCATTCTCAGCATTTGACACAGACCCCAGACTTTTCATGTATGCCTAATCTTGAAAAGCTTGTACTTAGAGATTGTACAAGCCTGTCTGAGGTTTCCCATAGCATTGGATATCTCAATAAAGTTTTACTGATAAATTTGAAAGGCTGTATTAGCCTTCGTAACCTTCCAAGAAGCATCTATAAGTTGAAATCTCTGAAAACTCTCATCCTTTCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACGTGGAACAGATGGAATCTTTGACAACCCTGATTGCAGATAACACTGCAATAACAAGAGTCCCCTATTCATTAGTCAGGTCAAAAAGCATTGGATATATTTCTTTGTGCGGTCATGAAGGACTCTCTCATGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAAATAACCTCTCATCCTTAGTTCAAACATCTGCAGGCATGTCATCTCTTGTTTCTTTAAATGTATCAAGTAGTAGTTCCCAGGGACTATCATCTATTCCCGTGGACCTCCCAAAGCTTCAAAGTCTGTGGATGGAGTCTGGCTCAGAACTTCAACTTTCTCGAGATGCAGAAAGAATTTTGGGTGCCTTGTATGCCATGAATTCTTCTAAAGAATTGGAATCAACTGCAACTACATCAGAAGTATCAAATATGGAAACTTCTGCCTTGATGGAATGCATTTCTCAAGGGCTTGATTCCGGATCAAAAGGTTCCTTGAAATATCTTTTATTTCAAATGGGAATGAATTGTCAAGCCACCAGTATTCTGAAAGAGATCATTTTAGAGAATATGGCTGTTGGAGGGTCTGGTGTGAGCTTGCTCCCTGGAGACAATTATCCAGATTGGTCAACCTTCAACTCAGAAGGCTGTTCTGTAATTTTTGAAGTCCCTCAAGTGAATGGGCGTAGTTTGAAGGCAATGATGTGTGTTGTCCATTCTTCTACCGCAGATGACATAACATCAGATGGCCTTCAAAATGTGTTGGTGATAAATTGCACAAAGAACACTATTCAGCTCTATAAGAGGAATGCATTAGCCTCCTTTGAAGATGAAGAGTGGCGGAAAGTAGTATCAAATATTGAACCAGGTAACAAAGTAAATATGGTGGTTGTTTTTGAGAACGGATTCACTGTGAAGAAGACAACTGTTTATCTTGTATATGATGAACCAATTAGGGAGGAAGTGGAACCTTGCAATGCACCATATAAGAATGAAATTGTTTTTGGTGGTGATGAAATTGAATCTGCTGTCAGGAGGAGCTCTGTTCAAGTGGAGTCAGTGGATGACTTGAAACAAAAACAGAAGAGAAGGAAATTCCAATAA 3468 0.404 MAADPSSHRSNSPSQDFNWDDLLDQSETLLHDCVSTFHSPPAPAPAPPPAPAPAPPPTVNEVFWEQFSTERTSYELLRIHEVFLSFRGEDTRASFTSHLYAALQNAGVNVFRDDDSLPRGDQITSSLLQAIEDSQISVIVFSINYANSRWCMEELVKIMDCHRTIGQVVLPVFYGVDPSEVRRQTGEFGNKFQDLTNRIIALDRYGFDQVRVRLDNWVSGWRVALCEAGGIAGFVVLNSRNESEAIENIVENVTSLLDKTDMFIADNPVGVESRVQDMIQLLDNQQSNDVLLLGVWGMGGIGKTTIAKAIYNKIGRNFEGRCFLANIREVGEQDAGQVHLQEQLLFDIFKKTTKVHSTESGKNILKDRLCSKRVLLVLDDVNKLDQLNALCGSREWFGSGSRIIITTRDQHILRGSRVDQVYIMKQMDESESIELFSWHAFKQASPREDFSEISRNVVEYSGGLPLAVEVLGSYLFERGVTEWKSVLDKLKTIPNDQVQKKLRISYDGLNDDKEKDIFLDIACFFIGMDRSDAIQILNGCKLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREVSPKEPEERSRLWFHEDVIEVLSDQTGTKAIEGLALKLPVKNTKCFSTEAFEKMKKLRLLQLAGVKLEGDFKYLSRNLRWLCWHGFPLPFLPKNLRQENLVSIMLENNNIKHVWKDGQRMEMLKILNLSHSQHLTQTPDFSCMPNLEKLVLRDCTSLSEVSHSIGYLNKVLLINLKGCISLRNLPRSIYKLKSLKTLILSGCLMIDKLEEDVEQMESLTTLIADNTAITRVPYSLVRSKSIGYISLCGHEGLSHDVFPSIIWSWMSPTNNLSSLVQTSAGMSSLVSLNVSSSSSQGLSSIPVDLPKLQSLWMESGSELQLSRDAERILGALYAMNSSKELESTATTSEVSNMETSALMECISQGLDSGSKGSLKYLLFQMGMNCQATSILKEIILENMAVGGSGVSLLPGDNYPDWSTFNSEGCSVIFEVPQVNGRSLKAMMCVVHSSTADDITSDGLQNVLVINCTKNTIQLYKRNALASFEDEEWRKVVSNIEPGNKVNMVVVFENGFTVKKTTVYLVYDEPIREEVEPCNAPYKNEIVFGGDEIESAVRRSSVQVESVDDLKQKQKRRKFQ* 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3275 1155 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 85 1102 - -
Lja3g3275 1155 CDD AAA 269 409 - -
Lja3g3275 1155 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 521 IPR027417 -
Lja3g3275 1155 PRINTS Disease resistance protein signature 368 382 - -
Lja3g3275 1155 PRINTS Disease resistance protein signature 461 475 - -
Lja3g3275 1155 PRINTS Disease resistance protein signature 699 715 - -
Lja3g3275 1155 PRINTS Disease resistance protein signature 292 307 - -
Lja3g3275 1155 SUPERFAMILY Toll/Interleukin receptor TIR domain 79 200 IPR035897 -
Lja3g3275 1155 SUPERFAMILY L domain-like 567 894 - -
Lja3g3275 1155 SMART AAA_5 289 428 IPR003593 -
Lja3g3275 1155 Gene3D - 77 263 IPR035897 -
Lja3g3275 1155 Gene3D - 264 423 IPR027417 -
Lja3g3275 1155 SMART till_3 79 231 IPR000157 GO:0007165
Lja3g3275 1155 Pfam TIR domain 80 197 IPR000157 GO:0007165
Lja3g3275 1155 MobiDBLite consensus disorder prediction 40 57 - -
Lja3g3275 1155 Pfam NB-ARC domain 272 504 IPR002182 GO:0043531
Lja3g3275 1155 Gene3D - 426 510 IPR042197 -
Lja3g3275 1155 Gene3D Ribonuclease Inhibitor 788 941 IPR032675 -
Lja3g3275 1155 Gene3D Ribonuclease Inhibitor 616 787 IPR032675 -
Lja3g3275 1155 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 85 1102 IPR044974 GO:0006952
Lja3g3275 1155 MobiDBLite consensus disorder prediction 35 57 - -
Lja3g3275 1155 ProSiteProfiles TIR domain profile. 78 257 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3275 Lja-Chr3 63897339 63903134 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3275 87 816 WRKY Transcription Factor Family AT4G12020 32.228 2.78e-87 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3275 - - lja:Lj0g3v0331109.1 1640.55