LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja3g3272	ATGATGAATCATCACACAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCGGCTCCTTCAATTATCCATCTCAGTCTCTCAGCCAAAGCGTTTCATCGTCTTCGCTTGATGTTGGAGTGGTGCCAGATGGGAACGCGGTTTCAGACATGTCGTATTTGAACAGCTCCGATTCGAGCGGGATGGTGGTTTCCGGCGGCGGCGGAAGCCAGCCGGCGACGCAGCTCTGCGGGATGGATCGGGAGGCAAGGGTTCTGAGATACAGGGAGAAGAGGAAGAACCGGAAATTTGAGAAAATCATCTTCCATCCCCAGCACCTTTCTCTGAACCCAAATCAGATCCCTCGCTTCAAAACTAACAAATGGGTTGTCATGGAATCTAAGAGCTTGCAACACCAAATAGAGATGATAACTGAAAATGCTGAGAAAAACTATAGGTCTGGAGGGGTCGTTGGGATTTCAAACTACTATCATGGTACAAAATTGCTAATCAACTCTGATGTCTATGACGCTATAGAATACAAGAAAAGTACTGATGTGTCTATTTCACAAGGAATTACCCAGATGCCATCCCAGATTAAACTTTCATTTGAGGAAGAAATTCTTGAAGCACCAAGGATGACAATATCAGATATCAGTTATTGCACTGAGCCTTGCACTGTATCTATACTTGCTAAAGTCATTGAGATCAATTATGATAATGGATGGATGTACAACTCATGCTTTAAGTGCTTGAAGAAAGTAGAGGATGTTGGAAATAAATTTTATTGCTCCAAATGCTCTAAAATGGTGAAGTCTATCAAAAGGTATAAGGTCAATATTTATGCCATTGATGACAGCGGTTCCGCATCTTTGGTATTATTTGACGGGTCTCTTTTGCCATTTATTGGAAAAAATGCTGAAGAATTACAAGCTGCTATGGATGAGGCGGCTCATGGTCAGGGGTATCCAATTGAGCTGAATTCAATGATTGGTGAATTTTTTATGCTGAATATTGATGTTACCCAGAAGAACATCGAGGACAATTGGCAAACTTATACAGTGAGGAAGTTGAGTCATGACCAAGCAATAATTTCCAAATACAGGCTTAAGCATAATATAGAGGATGTTCAAAACAAAAACTGTGATGCCACACAGTCAGCTCATGATGACCAGGGAACACCTTCACAACAACCATATGATCTATCAAAGGATTGTACGCCCAGGGTAAATGACCCTGGTGCTTCAACCGAAGTGTGTGGGAAGCGAGATTCTGATGTCGCAGACTTGGCTTCGCAAGATGAAGGCGAAAGGCTGCAAGCATCTGCTGTGAAGAAAAAACTCAAGATGGCCACTGTTAAAGTGGAGCCAAATTCAAACTAG	1368	0.4247	MMNHHTEGCFDIDFCRSKLSGSFNYPSQSLSQSVSSSSLDVGVVPDGNAVSDMSYLNSSDSSGMVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKIIFHPQHLSLNPNQIPRFKTNKWVVMESKSLQHQIEMITENAEKNYRSGGVVGISNYYHGTKLLINSDVYDAIEYKKSTDVSISQGITQMPSQIKLSFEEEILEAPRMTISDISYCTEPCTVSILAKVIEINYDNGWMYNSCFKCLKKVEDVGNKFYCSKCSKMVKSIKRYKVNIYAIDDSGSASLVLFDGSLLPFIGKNAEELQAAMDEAAHGQGYPIELNSMIGEFFMLNIDVTQKNIEDNWQTYTVRKLSHDQAIISKYRLKHNIEDVQNKNCDATQSAHDDQGTPSQQPYDLSKDCTPRVNDPGASTEVCGKRDSDVADLASQDEGERLQASAVKKKLKMATVKVEPNSN*	456

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja3g3272	455	Gene3D	-	200	371	IPR012340	-
	Lja3g3272	455	Pfam	Replication factor-A C terminal domain	225	352	IPR013955	-
	Lja3g3272	455	CDD	RPA1_DBD_C	223	352	IPR013955	-
	Lja3g3272	455	SUPERFAMILY	Nucleic acid-binding proteins	207	369	IPR012340	-
	Lja3g3272	455	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 4	3	103	IPR045281	GO:0009909
	Lja3g3272	455	MobiDBLite	consensus disorder prediction	417	447	-	-
	Lja3g3272	455	MobiDBLite	consensus disorder prediction	379	399	-	-
	Lja3g3272	455	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 5	3	103	-	-
	Lja3g3272	455	MobiDBLite	consensus disorder prediction	379	455	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja3g3272	Lja-Chr3	63798334	63807547	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja3g3272	9	103	C2C2-CO-like Transcription Factor Family	AT5G57660	63.158	1.06e-20	91.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja3g3272	-		-	lja:Lj0g3v0230319.1	441.81

Showing 1 to 1 of 1 entries