Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3272 ATGATGAATCATCACACAGAAGGTTGCTTCGACATCGATTTTTGCAGATCGAAGCTATCCGGCTCCTTCAATTATCCATCTCAGTCTCTCAGCCAAAGCGTTTCATCGTCTTCGCTTGATGTTGGAGTGGTGCCAGATGGGAACGCGGTTTCAGACATGTCGTATTTGAACAGCTCCGATTCGAGCGGGATGGTGGTTTCCGGCGGCGGCGGAAGCCAGCCGGCGACGCAGCTCTGCGGGATGGATCGGGAGGCAAGGGTTCTGAGATACAGGGAGAAGAGGAAGAACCGGAAATTTGAGAAAATCATCTTCCATCCCCAGCACCTTTCTCTGAACCCAAATCAGATCCCTCGCTTCAAAACTAACAAATGGGTTGTCATGGAATCTAAGAGCTTGCAACACCAAATAGAGATGATAACTGAAAATGCTGAGAAAAACTATAGGTCTGGAGGGGTCGTTGGGATTTCAAACTACTATCATGGTACAAAATTGCTAATCAACTCTGATGTCTATGACGCTATAGAATACAAGAAAAGTACTGATGTGTCTATTTCACAAGGAATTACCCAGATGCCATCCCAGATTAAACTTTCATTTGAGGAAGAAATTCTTGAAGCACCAAGGATGACAATATCAGATATCAGTTATTGCACTGAGCCTTGCACTGTATCTATACTTGCTAAAGTCATTGAGATCAATTATGATAATGGATGGATGTACAACTCATGCTTTAAGTGCTTGAAGAAAGTAGAGGATGTTGGAAATAAATTTTATTGCTCCAAATGCTCTAAAATGGTGAAGTCTATCAAAAGGTATAAGGTCAATATTTATGCCATTGATGACAGCGGTTCCGCATCTTTGGTATTATTTGACGGGTCTCTTTTGCCATTTATTGGAAAAAATGCTGAAGAATTACAAGCTGCTATGGATGAGGCGGCTCATGGTCAGGGGTATCCAATTGAGCTGAATTCAATGATTGGTGAATTTTTTATGCTGAATATTGATGTTACCCAGAAGAACATCGAGGACAATTGGCAAACTTATACAGTGAGGAAGTTGAGTCATGACCAAGCAATAATTTCCAAATACAGGCTTAAGCATAATATAGAGGATGTTCAAAACAAAAACTGTGATGCCACACAGTCAGCTCATGATGACCAGGGAACACCTTCACAACAACCATATGATCTATCAAAGGATTGTACGCCCAGGGTAAATGACCCTGGTGCTTCAACCGAAGTGTGTGGGAAGCGAGATTCTGATGTCGCAGACTTGGCTTCGCAAGATGAAGGCGAAAGGCTGCAAGCATCTGCTGTGAAGAAAAAACTCAAGATGGCCACTGTTAAAGTGGAGCCAAATTCAAACTAG 1368 0.4247 MMNHHTEGCFDIDFCRSKLSGSFNYPSQSLSQSVSSSSLDVGVVPDGNAVSDMSYLNSSDSSGMVVSGGGGSQPATQLCGMDREARVLRYREKRKNRKFEKIIFHPQHLSLNPNQIPRFKTNKWVVMESKSLQHQIEMITENAEKNYRSGGVVGISNYYHGTKLLINSDVYDAIEYKKSTDVSISQGITQMPSQIKLSFEEEILEAPRMTISDISYCTEPCTVSILAKVIEINYDNGWMYNSCFKCLKKVEDVGNKFYCSKCSKMVKSIKRYKVNIYAIDDSGSASLVLFDGSLLPFIGKNAEELQAAMDEAAHGQGYPIELNSMIGEFFMLNIDVTQKNIEDNWQTYTVRKLSHDQAIISKYRLKHNIEDVQNKNCDATQSAHDDQGTPSQQPYDLSKDCTPRVNDPGASTEVCGKRDSDVADLASQDEGERLQASAVKKKLKMATVKVEPNSN* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3272 455 Gene3D - 200 371 IPR012340 -
Lja3g3272 455 Pfam Replication factor-A C terminal domain 225 352 IPR013955 -
Lja3g3272 455 CDD RPA1_DBD_C 223 352 IPR013955 -
Lja3g3272 455 SUPERFAMILY Nucleic acid-binding proteins 207 369 IPR012340 -
Lja3g3272 455 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 103 IPR045281 GO:0009909
Lja3g3272 455 MobiDBLite consensus disorder prediction 417 447 - -
Lja3g3272 455 MobiDBLite consensus disorder prediction 379 399 - -
Lja3g3272 455 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 3 103 - -
Lja3g3272 455 MobiDBLite consensus disorder prediction 379 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3272 Lja-Chr3 63798334 63807547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3272 9 103 C2C2-CO-like Transcription Factor Family AT5G57660 63.158 1.06e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3272 - - lja:Lj0g3v0230319.1 441.81