Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3270 ATGGAGAAGTTAGGTGACAAAGAAAACAAAATTATGGACAAAGCAAAAAGAGGACCATGCCTCAATCGCATAATTGGGAAAATGAATGATTCTTCAGGAGATAACTGGCTTAATCCGTTTGATGACGAGCTTTATATCATCGATGAGGATGATAGTCTGAATTCTAGCCCTGCCAACGGTTTGAAGCAGGGTGTGAATGAAGGGGATAATGATGGGGAAAATTTTGTGGATGTCGATGAGATGTTTGAAACTGGAAATGACAGTAAAAAAAACTCTGATGTAGAAGTTAAAGTCATGAAAAGGATTACTGAATTGTCTGCAGACGACATTAGAGGGATGGATTTCTCTTCTGAGGAGGAAGCATGTGAATTCTATTCTAAATATGCTCGTATCCGTGGATTCTCTCCAAGAAAAGATGATGTATACAAGGATGATGATGGCAAGATTATCTCACGACAGGTGGTGTGCAATAGGGCTGGACAAAGGCATCAGAAGCATATGCATAATAGTGGCAGAAGAAAACAACCTAAGCCTATTACTAGAGTGGGTTGCCTTGCTAGAATTCGATTTCGTTGTTTTTCTAGCAGTAAAAGGTGGAAAGTGGTTTTTTTTTGCGATGAACACAATCACCCATTAACACCATATAAGCATGTTCATTTGATTCCAAAATTCCGGCAATTGAGTGAAGGGGACAAAGCTCAAGCAGAAGCTGGGATGAGAAGTGAGTATATTGATGAATTTCCAAGCAATCTAGTTTCTAAGAGGTGGTTGAAAACAGCCAAGTCTGCTCATGTGTATTCAATTTCAGAGCCTAGTATTCATTCACAGAATATGAAATTGTTGCGAAAAGGAGCTATGTCTGCCGCATGCAACTATCTCGCAGAAATAGCATGCGAAAAGGATGATGATTTTTCAAGTGTAATGGAAGACATTTATAAGCTGTTGAGGGATGTTCAGAAGAGTCGCAAACCGGGTTGTACAACAAAGAGTGCAGCCTTTAATGTGGGTGATCCAACTGTTGTACAGGGTAGAGGTGCCCCCAAGAAGACCAGAACTGTCACCAAGAGAAGGCATTGCTCAAATTGCAGGGGTATTGGACACACGATTCGTACGTGCCCGGTTTTGCTTTATCCTGATCAAGTCAATAACAGTGAAACAGGTGAATCTGCAAGTGAAGGAATTGAGGACAGCACAGACGACGAGACAAACGTTGGCAGCGTAGATCGGCAGAATAAGGGGGCTTCGGTGGCAAGTAAACTTAAATCGCAGCAACGGAAGCAGGGAAATGACTCCTCATCCACCCAAAACAAGCGTTCAAATCAGAACACGGTGTCGACAAAACAAAATAAGCGTAAATCTAAGCAGCGAGAAGTCCCAGTCATGATTCATTCAAGCCAAGTATCTGTGAATGAAGTGACTCAGAGTTCACCGAATAATGCAGGTCGCGGTGATGTGGATAACAACAGAGTTACTTTGTTGCCCCAGCATCCACAGGAAATACCTTTGACCCAAGAATCTGTGAATCAGGTACAGGTTTATAACATGGAGCCTATTGTACAACAAGTCCACTATCCTGTTGTTCGTGCTTCAGCTGGACTTCCATTTTTGCAACCTACTTATGCCGTGAATATGACTAATGGAGTTCAGGTGTTTCCACAGTTTATACAGCACCAAAACGTGCAGGTTCCTTACCAAGGAGTTCAGATGCAAACTCTATTTCAAGCTGGACCTTCTGGCTTACTCCCGACATTTTCATCGACGTTGGCGGCAGTCGATAGGAGACACAATAGAAATTCTAGTTTAGGAAATAATTGA 1815 0.4209 MEKLGDKENKIMDKAKRGPCLNRIIGKMNDSSGDNWLNPFDDELYIIDEDDSLNSSPANGLKQGVNEGDNDGENFVDVDEMFETGNDSKKNSDVEVKVMKRITELSADDIRGMDFSSEEEACEFYSKYARIRGFSPRKDDVYKDDDGKIISRQVVCNRAGQRHQKHMHNSGRRKQPKPITRVGCLARIRFRCFSSSKRWKVVFFCDEHNHPLTPYKHVHLIPKFRQLSEGDKAQAEAGMRSEYIDEFPSNLVSKRWLKTAKSAHVYSISEPSIHSQNMKLLRKGAMSAACNYLAEIACEKDDDFSSVMEDIYKLLRDVQKSRKPGCTTKSAAFNVGDPTVVQGRGAPKKTRTVTKRRHCSNCRGIGHTIRTCPVLLYPDQVNNSETGESASEGIEDSTDDETNVGSVDRQNKGASVASKLKSQQRKQGNDSSSTQNKRSNQNTVSTKQNKRKSKQREVPVMIHSSQVSVNEVTQSSPNNAGRGDVDNNRVTLLPQHPQEIPLTQESVNQVQVYNMEPIVQQVHYPVVRASAGLPFLQPTYAVNMTNGVQVFPQFIQHQNVQVPYQGVQMQTLFQAGPSGLLPTFSSTLAAVDRRHNRNSSLGNN* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3270 604 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 68 276 - -
Lja3g3270 604 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 68 276 - -
Lja3g3270 604 MobiDBLite consensus disorder prediction 383 487 - -
Lja3g3270 604 MobiDBLite consensus disorder prediction 407 448 - -
Lja3g3270 604 MobiDBLite consensus disorder prediction 459 487 - -
Lja3g3270 604 Pfam FAR1 DNA-binding domain 123 213 IPR004330 -
Lja3g3270 604 ProSitePatterns EF-hand calcium-binding domain. 69 81 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3270 Lja-Chr3 63765380 63769538 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja3g3270 FAR1 3.3e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3270 - - lja:Lj3g3v0948310.1 283.108