Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3240 ATGGAACCGGAAGAAGCCGCCGACGGAAGCGGCGACGAGGGGATGCCGGGGTTAGCCGAAGGTGGCAGCAGCGAAGGCGGCTGCAGAGACAGAGTGAAAGGTCCTTGGTCTCCGGAAGAAGACGCCATTCTGAGCCAACTGGTGAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCTCGCGGGATCGCCGGAAGATCCGGCAAGTCTTGCCGCCTCCGGTGGTGCAATCAGCTCGACCCTTCCGTCAAGCGCAAGCCCTTCACCGATGAGGAGGATCGGATTATAGTTGCTGCTCATGCAATCCATGGGAACAAATGGGCAGCCATCGCCAAGATTCTTCCTGGAAGAACAGACAATGCCATTAAGAACCACTGGAATTCTACTTTGAGGCGTCGGGGAGTTGAACATGATAAGATTAAGTTAGAATCTGGAAACATGGTGGAAGACCTTAGCTTGGACAAAGCCAAAGCATCATCAGAAGAAACTCTATCATGTGGAGATGTAAATTCCTTAAAATCCTCAGAGGGAAGAGATGTCAGTTCTATGGAGATCATCGATGATAAATGTGAAGACAAAGCTCAGACTGAGGTTCAATTATACCATGAAGTCAAGGATCCACCAACCCTTGTTCGGCCGGTAGCACGTGTAAGTGCTTTTAGTGTATATCACTCTTCCAATGGTTTACAGCCTTCAACATCAGTTCAAAGACCTGTTCCTATGCAAGGTCCCATGTTACAATCATCAAAACCAGACTTTGAACTGTGTAAAATGCTTGAAGGAATTTATGGTGACCAGTCAGTGCCTTGCCAGTGTGGCCATGGATGTTGTGCTGCTCCCAATGGTAAAAACTCGAAAAGCTCTTTGCTGGGACCAGAATTCATTGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTGCAGACATCAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAGTAGCAACGCAAAAATGGTGGGTGACACAACTGGCAGGGTACTATCTAATGGATCTCAGGTACATAGTGGCCATTAG 1056 0.4839 MEPEEAADGSGDEGMPGLAEGGSSEGGCRDRVKGPWSPEEDAILSQLVSKFGARNWSLIARGIAGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIAKILPGRTDNAIKNHWNSTLRRRGVEHDKIKLESGNMVEDLSLDKAKASSEETLSCGDVNSLKSSEGRDVSSMEIIDDKCEDKAQTEVQLYHEVKDPPTLVRPVARVSAFSVYHSSNGLQPSTSVQRPVPMQGPMLQSSKPDFELCKMLEGIYGDQSVPCQCGHGCCAAPNGKNSKSSLLGPEFIEFSEPPSFPSFELAAIAADISNLAWLKSGLESSNAKMVGDTTGRVLSNGSQVHSGH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3240 351 MobiDBLite consensus disorder prediction 1 35 - -
Lja3g3240 351 ProSiteProfiles Myb-like domain profile. 28 79 IPR001005 -
Lja3g3240 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 134 IPR017930 -
Lja3g3240 351 PANTHER MYB PROTEIN-RELATED 7 328 - -
Lja3g3240 351 CDD SANT 35 77 IPR001005 -
Lja3g3240 351 SMART sant 32 81 IPR001005 -
Lja3g3240 351 SMART sant 84 132 IPR001005 -
Lja3g3240 351 Pfam Myb-like DNA-binding domain 36 93 - -
Lja3g3240 351 ProSiteProfiles Myb-like domain profile. 80 130 IPR001005 -
Lja3g3240 351 SUPERFAMILY Homeodomain-like 30 126 IPR009057 -
Lja3g3240 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 79 IPR017930 -
Lja3g3240 351 CDD SANT 87 130 IPR001005 -
Lja3g3240 351 Gene3D - 87 133 - -
Lja3g3240 351 Gene3D - 32 84 - -
Lja3g3240 351 PANTHER - 7 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3240 Lja-Chr3 63119645 63125701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3240 22 351 MYB Transcription Factor Family AT3G09230 52.353 1.26e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g3240 Myb_DNA-bind_6 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3240 K09422 - gmx:100811740 575.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3240 3 63119645 63125701 Lja3g3240 3 63119645 63125701 ECH