Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3239 ATGGATTTGGAGCAAGGATGGCACCACCATTCTATGATTGGAAGTGACACAAGCATGTGCTTCTATGATGTTGGTGATGGTTCCTACCATTATCATTTATATTCTACAAATGTGATCACATATGGTAATTACAACAATGCTTGTGGTTTCAATCATGAGATCGGAAATGGCGCTGATTCTCGGAGGGTATCTTCTGTTACTGATTCATTAGAAGAGGTGGAAATTGAAAGTGAGGTTCCAGAAATTAAGGTAGAGAAGAATTGCAGAATTTGTCACCTGGGTTTGGAGAGTGATGATGGTCAGGAGCTTGAAGCTTCCATCACCTTGGGCTGCTCTTGTAAGGATGATTTATCTATTGCTCACAAGAATTGTGCAGAAACTTGGTTCAACATTAAGGGGGATAGGACATGTGAAATTTGTCATTCCATTGCACAAAATGTTCATGGAGCGACTGAGGAGATACCAGACACTTTGAGTAACCAGAATAGTCCTGCTGAAGCATCAACACAAGCTCCTTCAGAAGAAAGTCAAAGCTTTTGTCATGACCATCACTTCTTGCCTTGTCTACTTGTTTTATTAATCTGTATATTTGTTATATCAATGATTTTTCACTTCAATAAGTCTTCATCATGA 633 0.3902 MDLEQGWHHHSMIGSDTSMCFYDVGDGSYHYHLYSTNVITYGNYNNACGFNHEIGNGADSRRVSSVTDSLEEVEIESEVPEIKVEKNCRICHLGLESDDGQELEASITLGCSCKDDLSIAHKNCAETWFNIKGDRTCEICHSIAQNVHGATEEIPDTLSNQNSPAEASTQAPSEESQSFCHDHHFLPCLLVLLICIFVISMIFHFNKSSS* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3239 210 SUPERFAMILY RING/U-box 85 143 - -
Lja3g3239 210 PANTHER OS01G0850200 PROTEIN 2 208 - -
Lja3g3239 210 Pfam RING-variant domain 88 140 IPR011016 GO:0008270
Lja3g3239 210 PANTHER ZINC FINGER, RING-CH-TYPE 2 208 - -
Lja3g3239 210 SMART ringv_2 87 141 IPR011016 GO:0008270
Lja3g3239 210 ProSiteProfiles Zinc finger RING-CH-type profile. 80 147 IPR011016 GO:0008270
Lja3g3239 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 150 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3239 Lja-Chr3 63117232 63118449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3239 1 210 C3H Transcription Factor Family AT2G37950 40.455 1.62e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3239 - - gmx:100813946 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3239 3 63117232 63118449 Lja3g3239 3 63117232 63118449 ECH