Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3238 ATGGGGGCTCGTTGCTCTAAATTCTCCTTCTGCTGGTTCCATTCCCACCTTAAACCTTCTGTCCTTGAATCCTCTGACCAAGAAAATGGTGGCAAGGGTGAAAAAATCTTGTGGCCTAGTTTTGCTGAGTTCAGCTTGGAGCAACTGAAGGCCGCCACAAATGGTTTCTCCTCAGAAAACATAGTCTCTGAGCATGGTGAGAAAGCTCCAAACGTGGTTTACAAAGGGAAACTTGAGAATGGACAGTGGATTGCCATCAAACGTTTCAACAAGTTTGCTTGGCCTGATTCTCGCCAATTCATCGAAGAAGCCACACAAGTGGGGAGCCTCAGAAGTGAACGTTTGGCCAATTTGGTTGGTTACTGCTATGAAGGGGATGAGAGGCTGCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCTAAACATCTCTTTCATTGGGAGGCACAGCCTATGAAATGGGCAATGAGGTTGAGGGTAGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACCAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTATAGGATCTTGTTTGATCAGGATGGCAATCCTAGGTTGTCTTGCTTCGGGCTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACTAACTTGGCTTTCACTCCTCCTGAGTACTTAAGAACTGGTAGAGTGACGCAAGAGAGTGTGGTTTACAGTTTCGGAACCCTGTTGCTAGACCTCTTGAGTGGTAAACATATTCCCCCAAGCCATGCACTGGACCTGATACGTGGCAAAAACTTTTTGATGCTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAAGATGATGGAACTGAGTTGGTTCGTTTGGCTTCGCGCTGCTTACAGTATGAAGGTCGTGAGAGGCCAAATGCAAAGTCCCTTGTTGCATCTCTTATGCCACTTCAGAAAGAAACAGAGGTCCCTTCATATGTTCTGATGGGTCTCCGGAATGAAACTGCATCCTCAACAAAGCCAGTATCATTGACACCTTTTGGTGAAGCATGTTTGAGACTGGATCTAACTGCCATACATGAAATATTAGAGAAGACTGGTTACAAGGATGATGAAGGAATTGCCAATGAGCTTTCCTTTCAATTGTGGACAAGTCAAATGCAGGAAACCTTGAACTTGAAGAAGCATGGTGATACTGCATTTAGAGCTAAGGACTTTGCCACTGCCATTAAATGCTACACGCAATTCATAGATGGAGGGACTATGGTGTCACCTACAGTGTATGCAAGGCGCTGCTTATCTTATTTGATGAATGGTATGACACAGGAAGCTCTGGGGGATGCTATGCAAGCACAAGCTGTATCTCCTGAGTGGCCTACTGCTTTGTATCTTCAGGCAGCTTGTCTTTTCAGTCTTGGAATGGAAAATGATGCACAAGAGACTCTCAAAGATGGGACTAACATGGAGGCCAAAAAGAACAAAAACTGA 1476 0.4478 MGARCSKFSFCWFHSHLKPSVLESSDQENGGKGEKILWPSFAEFSLEQLKAATNGFSSENIVSEHGEKAPNVVYKGKLENGQWIAIKRFNKFAWPDSRQFIEEATQVGSLRSERLANLVGYCYEGDERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTQESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEGRERPNAKSLVASLMPLQKETEVPSYVLMGLRNETASSTKPVSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFATAIKCYTQFIDGGTMVSPTVYARRCLSYLMNGMTQEALGDAMQAQAVSPEWPTALYLQAACLFSLGMENDAQETLKDGTNMEAKKNKN* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3238 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Lja3g3238 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Lja3g3238 491 Gene3D Tetratricopeptide repeat domain 383 491 IPR011990 GO:0005515
Lja3g3238 491 SUPERFAMILY TPR-like 387 480 IPR011990 GO:0005515
Lja3g3238 491 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3238 491 SUPERFAMILY Protein kinase-like (PK-like) 35 319 IPR011009 -
Lja3g3238 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 491 IPR045845 GO:0004672|GO:0009742
Lja3g3238 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 491 - -
Lja3g3238 491 Gene3D Phosphorylase Kinase; domain 1 33 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3238 Lja-Chr3 63090621 63096206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3238 44 310 Glycoside Hydrolase AT3G07070 34.915 3.46e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lja3g3238 PK_Tyr_Ser-Thr 5.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3238 - - gmx:100814477 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3238 3 63090621 63096206 Lja3g3238 3 63090621 63096206 ECH