Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3208 ATGGCCAACCTGCTTCTTCAACTCTTCCCTGTCTTGCTCTTCCTTCTGATCCCAGTTTCACCTCAGCCTGATAATCTCCTCTATACAGGATTCAAGGGTTCTGGAGCTGAAAATCTAACCTTGAATGGGGTAGCAGAGATAGAGAAAAATGGAATACTGAGGCTAACAAATGAGACAAGTAAGATAATGGGTCATGCTTTTCATCCAACCCCTTTTCAATTCAAGAACCCTAGAAATGGTAAGGCTTTCTCCTTTTCTTCCTCATTTGCTCTTGTTATTGTCCCTGAGTATCCAAAGCTTGGTGGGCATGGCATGGCTTTCACCATTTCACCTTCCAAGGATCTCAATGCTCTTCCTAGCCAGTACCTTGGTCTCCTCAACAAAACCAACATTGGGAACTTATCCAACCACCTCTTGGCTGTTGAGTTTGACACAGTCCAAGATTTTGAGTTTAAGGATATCAATGACAACCATGTTGGAATCAACATCAACAACTTGGTTTCCAATGCTTCTGCCCCAGCAGGGTATTTCACTGAGGATTCAAGTTCAAGTTCCAAACAAAATCTTACTCTCCAAAGTGGGAAACCAATTCTAGCTTGGGTTGATTATGATTCTGCTGTAAATGTTATCAGTGTTACCCTTTCTTCATCTTCTTCAAAACCCAAAAAACCAATCTTGTCCTATGCCTTAGATCTCTCACCAATTCTTCAGGAATCTATGTATGTTGGGTTCTCTGCTTCAACAGGTTTGCTTGCTAGCTCCCATTATGTATTGGGTTGGAGCTTGAAAATCAATGGACCAGCTCCACCCCTTGATCTCTCTTCTCTCCCAAACCTTCCAGGGCCAAAGAAGAAACATACATCTGTCATAATTGGAGTTTCAGTATTTTTTGTTCTTGCACTTTCTGCTGCTATCTTATTTGGCATTTACATGTGGAGAAAATACAAGAATGCTGATGTGATAGAAGATTGGGAGCTTGAGATTGGGCCACACAGATACTCCTACCAAGAGCTCAAGAAGGCCACAAAAGGTTTCAAGGAAAAAGAGTTACTTGGGCAAGGTGGGTTTGGTCAAGTTTATAGAGGAACATTGCCAAATTCCAAGACCCAAGTAGCTGTTAAGAGAGTTTCACATGACTCATCACAAGGGCTAAGGGAATTTGTGTCAGAAATAGCCAGTATAGGCCGGCTTCGCCATCGGAATTTGGTTCAGCTTCTGGGGTGGTGTCGCCGCCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGAAGCTTGGACAAGTACTTGTTTGATGAGCCGGAAACCATCTTAAATTGGGAACAAAGGTTCAAGATCATAAAGGATGTTGCTTCAGCACTTCTGTATCTACATGAAGGCTATGAGCAGGTGGTGATACACAGGGATGTGAAAGCTAGCAATGTGCTTCTAGATAGTGAACTCAATGGAAAACTAGGAGATTTTGGGTTAGCAAGATTGTATGAACATGGGGCTAACCCAAGCACCACAAAAGTTGTGGGAACTTTAGGCTATTTGGCACCTGAGTTTTCTAGAACAGGAAAAGCCACTCCTAGCTCTGATGTTTTTGCATTTGGGGCACTATTACTTGAGGTGGCATGTGGGTTTAGACCAATTGAGGCAAATGCATTACCAGATGATTTGATTTTGGTGGATTGGGTTTGGAAGAAATATAAAGAAGGGAGAGCACTTGATGTGGTGGACCCAAAACTAAATGGTGTTTTTGATGAAAGTGAGGTGCTCAAGGTGTTGAAAATGGGGCTATTGTGTTCAAGTAATGCAGCCACGGATAGGCCTAGCATGAGGCAGGTGGTGAGGTTTTTGGATGGTGAAGTTGGTTTGCCAGATGAGTTGAGAAAGTCAGGGGAGATAGCTCACCAGGATGGTTTTGATGAATTCTTGCACTCTGTTGAACCTTCCTCATTTGATAAGAGGAGTTCAAGCTCCTCTATTAAACATGGAGACTTGAATTCTGGTTTTTCTTCTTTTACTAGTGAGTTAAGAAATTCACACAACACTTTCTAA 2046 0.4252 MANLLLQLFPVLLFLLIPVSPQPDNLLYTGFKGSGAENLTLNGVAEIEKNGILRLTNETSKIMGHAFHPTPFQFKNPRNGKAFSFSSSFALVIVPEYPKLGGHGMAFTISPSKDLNALPSQYLGLLNKTNIGNLSNHLLAVEFDTVQDFEFKDINDNHVGININNLVSNASAPAGYFTEDSSSSSKQNLTLQSGKPILAWVDYDSAVNVISVTLSSSSSKPKKPILSYALDLSPILQESMYVGFSASTGLLASSHYVLGWSLKINGPAPPLDLSSLPNLPGPKKKHTSVIIGVSVFFVLALSAAILFGIYMWRKYKNADVIEDWELEIGPHRYSYQELKKATKGFKEKELLGQGGFGQVYRGTLPNSKTQVAVKRVSHDSSQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPETILNWEQRFKIIKDVASALLYLHEGYEQVVIHRDVKASNVLLDSELNGKLGDFGLARLYEHGANPSTTKVVGTLGYLAPEFSRTGKATPSSDVFAFGALLLEVACGFRPIEANALPDDLILVDWVWKKYKEGRALDVVDPKLNGVFDESEVLKVLKMGLLCSSNAATDRPSMRQVVRFLDGEVGLPDELRKSGEIAHQDGFDEFLHSVEPSSFDKRSSSSSIKHGDLNSGFSSFTSELRNSHNTF* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3208 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Lja3g3208 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 6 664 - -
Lja3g3208 681 Pfam Legume lectin domain 27 276 IPR001220 GO:0030246
Lja3g3208 681 SMART serkin_6 345 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3208 681 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Lja3g3208 681 ProSitePatterns Protein kinases ATP-binding region signature. 351 374 IPR017441 GO:0005524
Lja3g3208 681 SUPERFAMILY Protein kinase-like (PK-like) 327 622 IPR011009 -
Lja3g3208 681 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g3208 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 284 IPR013320 -
Lja3g3208 681 CDD lectin_legume_LecRK_Arcelin_ConA 25 266 IPR001220 GO:0030246
Lja3g3208 681 PANTHER - 6 664 - -
Lja3g3208 681 CDD STKc_IRAK 351 617 - -
Lja3g3208 681 Gene3D Transferase(Phosphotransferase) domain 1 422 630 - -
Lja3g3208 681 Gene3D - 26 268 - -
Lja3g3208 681 Pfam Protein tyrosine and serine/threonine kinase 347 615 IPR001245 GO:0004672|GO:0006468
Lja3g3208 681 Gene3D Phosphorylase Kinase; domain 1 330 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3208 Lja-Chr3 62021905 62024478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3208 19 656 Receptor kinase-like Gene Family AT3G55550 57.829 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja3g3208 PK_Tyr_Ser-Thr 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3208 - - gmx:100801247 1035.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3208 3 62021905 62024478 Lja1g3353 1 41769464 41771781 PCT