Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja3g3202 | ATGGAACAGGGTCAATGTTATTGGATGCACACAAAGAGGAAATACTCTTTGAGCTCCAATAGTCTTGCTTCATCGTCACTATCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCAGGGTCTCTTGTTGGTGGCTGCACATGGCCACCAAGATCATACTCTTGCAGCTTCTGCAGGAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAGCAACCCTCTAGCCCCCAAAATAATGAAATTCTATTTCCTCATGACCTTGAAACTCATCAAACCCCTTTTAGTGCTCCATCTTTGGGTAATTACCTAGCACCATACCCTCCTCCTGTTTATGATTTGGCTTACAAGACTAACCCTAATCCTGATCATAACTTTCTTGCTTCAACTTCATCACCCTCACCTAATTCCAAGCCTTTGTTATCTCCATCAATTAATAATTCTTCATCTATTCTCCACAAGATTTCCCCTCTCAATTCTTCTGGAGATAGATTATATTCACAAAAGTTTGATATTGAAGAAGTCTCCAAGGGGATGGATGCAAGGTGTATGAATGAAGTTTCCAATGAAGATGATATTGATGTGGCTATGAGCTTAAATTTGGTTGTGTGCAGAGCTCAATTAACACCTGTGCAGTTTGAGAGTATCCAAGAGGCAGAAGATAGAAATTGCAAGAAGAGGAAAAGAATAGATGCTTCTTCTTCAAATGATCAATTTTTCCAAAAGTCAAGATCTGTTGATGATAGACATGTACATCATATGCAACCAAAGGTGTTTGAATTTAGCCCTATCAACATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAATTAA | 867 | 0.3979 | MEQGQCYWMHTKRKYSLSSNSLASSSLSWEEQAFAEDAAGSLVGGCTWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQPSSPQNNEILFPHDLETHQTPFSAPSLGNYLAPYPPPVYDLAYKTNPNPDHNFLASTSSPSPNSKPLLSPSINNSSSILHKISPLNSSGDRLYSQKFDIEEVSKGMDARCMNEVSNEDDIDVAMSLNLVVCRAQLTPVQFESIQEAEDRNCKKRKRIDASSSNDQFFQKSRSVDDRHVHHMQPKVFEFSPINIEELDLELRLGN* | 289 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja3g3202 | 288 | MobiDBLite | consensus disorder prediction | 134 | 156 | - | - | |
Lja3g3202 | 288 | Gene3D | Classic Zinc Finger | 47 | 103 | - | - | |
Lja3g3202 | 288 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
Lja3g3202 | 288 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 80 | IPR013087 | - | |
Lja3g3202 | 288 | PANTHER | OS07G0101800 PROTEIN | 1 | 288 | - | - | |
Lja3g3202 | 288 | PANTHER | C2H2 AND C2HC ZINC FINGER PROTEIN | 1 | 288 | - | - | |
Lja3g3202 | 288 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 79 | IPR036236 | - | |
Lja3g3202 | 288 | Pfam | C2H2-type zinc finger | 53 | 77 | - | - | |
Lja3g3202 | 288 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja3g3202 | Lja-Chr3 | 61931153 | 61932524 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja3g3202 | 1 | 103 | C2H2 Transcription Factor Family | AT5G06070 | 51.402 | 1.75e-25 | 99.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lja3g3202 | zf-C2H2_6 | 9.5e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja3g3202 | - | - | lja:Lj0g3v0263419.1 | 546.584 |