Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3202 ATGGAACAGGGTCAATGTTATTGGATGCACACAAAGAGGAAATACTCTTTGAGCTCCAATAGTCTTGCTTCATCGTCACTATCATGGGAAGAACAAGCTTTTGCAGAAGATGCTGCAGGGTCTCTTGTTGGTGGCTGCACATGGCCACCAAGATCATACTCTTGCAGCTTCTGCAGGAGAGAGTTCAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAGCAACCCTCTAGCCCCCAAAATAATGAAATTCTATTTCCTCATGACCTTGAAACTCATCAAACCCCTTTTAGTGCTCCATCTTTGGGTAATTACCTAGCACCATACCCTCCTCCTGTTTATGATTTGGCTTACAAGACTAACCCTAATCCTGATCATAACTTTCTTGCTTCAACTTCATCACCCTCACCTAATTCCAAGCCTTTGTTATCTCCATCAATTAATAATTCTTCATCTATTCTCCACAAGATTTCCCCTCTCAATTCTTCTGGAGATAGATTATATTCACAAAAGTTTGATATTGAAGAAGTCTCCAAGGGGATGGATGCAAGGTGTATGAATGAAGTTTCCAATGAAGATGATATTGATGTGGCTATGAGCTTAAATTTGGTTGTGTGCAGAGCTCAATTAACACCTGTGCAGTTTGAGAGTATCCAAGAGGCAGAAGATAGAAATTGCAAGAAGAGGAAAAGAATAGATGCTTCTTCTTCAAATGATCAATTTTTCCAAAAGTCAAGATCTGTTGATGATAGACATGTACATCATATGCAACCAAAGGTGTTTGAATTTAGCCCTATCAACATTGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAATTAA 867 0.3979 MEQGQCYWMHTKRKYSLSSNSLASSSLSWEEQAFAEDAAGSLVGGCTWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKQPSSPQNNEILFPHDLETHQTPFSAPSLGNYLAPYPPPVYDLAYKTNPNPDHNFLASTSSPSPNSKPLLSPSINNSSSILHKISPLNSSGDRLYSQKFDIEEVSKGMDARCMNEVSNEDDIDVAMSLNLVVCRAQLTPVQFESIQEAEDRNCKKRKRIDASSSNDQFFQKSRSVDDRHVHHMQPKVFEFSPINIEELDLELRLGN* 289
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3202 288 MobiDBLite consensus disorder prediction 134 156 - -
Lja3g3202 288 Gene3D Classic Zinc Finger 47 103 - -
Lja3g3202 288 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lja3g3202 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lja3g3202 288 PANTHER OS07G0101800 PROTEIN 1 288 - -
Lja3g3202 288 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 288 - -
Lja3g3202 288 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Lja3g3202 288 Pfam C2H2-type zinc finger 53 77 - -
Lja3g3202 288 SMART c2h2final6 53 75 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja3g3202 Lja-Chr3 61931153 61932524 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3202 1 103 C2H2 Transcription Factor Family AT5G06070 51.402 1.75e-25 99.4
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja3g3202 zf-C2H2_6 9.5e-06 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3202 - - lja:Lj0g3v0263419.1 546.584