Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3195 ATGGCGGAAAACAACTCCAATTACAACAACAACACCAATAAATCTGACCTGAGGAAAGGTCCTTGGAGTATAGAAGAAGACATGATGCTGATCGCGTATGTGGAGAGAAATGGTGAGAATTGGAATGCTGTGAAGAATAATTCTGGGTTGCTCAGGTGTGGCCCAAGTTGCAGGCGTAGGTGGGTGAATCATCTAAAGCCTGGTCTCAAGAAGGGTGCAATTTCTGCTGAAGAACAAAGAACCATCGTGGAACTTCATGCAATGTTTGGGAACAAATGGGCCAAAATAGCTACTCAGCTACCTGGCAGGACTGACAATGAGATCAAGAACTTTTGGCATAGCAGGGTGAAAAAGCGCGAGAAAGCAGGGTTACCCCTTTATCCCCCAGAAGTTCTTGCAAGAGCAGAAGCTTATCATCAGCCACAAAAGGAGAAGCAACTTCAACATATATTGTCTTCATCGTTTTCTGCAGGTGCTGATTACCCCAACAACCCTGGTGTGCTTCTGCCAAATCAACCAACTTTTGGAAATCCTCTGGCAAACCACCTTGATCCTGCTGCAAATTACTACACCAGTTCATACCCCCCGCTGCCGCTCTCACCGCTGCCGCAGTTTGAGTTTTTCAATAAGAATGGTGGTGACAGAAACATTGCTCTGCCTCTGTCCCCTGTTTCTGCATATGTAACAGGCTCGGCCTCTGAGATATCTGCGACCATAACTACCGCAGCTGCTGGCTCTGTTACCCCTGTTTCATCCCTTGCTAGTGAATTTGAAGGTTGGCTTGAAGCTACAAGCAACATGGCCAATGACTATCATGAAGATGAGAACAATGCTGAAGCTACTAATGAGAACCAGAGCAATGAACTTGGTAATTTTCAAATTTTAATTTTATGTTTCATGAATTTTGTGAAATATCTTGTGTGCAGCAGCAGCGACGGCAACCGCAATTTAAAACTCTTGTTTTTAATTTGTAGGTGA 978 0.4448 MAENNSNYNNNTNKSDLRKGPWSIEEDMMLIAYVERNGENWNAVKNNSGLLRCGPSCRRRWVNHLKPGLKKGAISAEEQRTIVELHAMFGNKWAKIATQLPGRTDNEIKNFWHSRVKKREKAGLPLYPPEVLARAEAYHQPQKEKQLQHILSSSFSAGADYPNNPGVLLPNQPTFGNPLANHLDPAANYYTSSYPPLPLSPLPQFEFFNKNGGDRNIALPLSPVSAYVTGSASEISATITTAAAGSVTPVSSLASEFEGWLEATSNMANDYHEDENNAEATNENQSNELGNFQILILCFMNFVKYLVCSSSDGNRNLKLLFLICR* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3195 325 CDD SANT 21 65 IPR001005 -
Lja3g3195 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Lja3g3195 325 CDD SANT 75 113 IPR001005 -
Lja3g3195 325 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Lja3g3195 325 Gene3D - 10 71 - -
Lja3g3195 325 Coils Coil 268 288 - -
Lja3g3195 325 Pfam Myb-like DNA-binding domain 71 113 IPR001005 -
Lja3g3195 325 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
Lja3g3195 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Lja3g3195 325 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Lja3g3195 325 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Lja3g3195 325 Gene3D - 75 119 - -
Lja3g3195 325 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 5 262 - -
Lja3g3195 325 SMART sant 70 118 IPR001005 -
Lja3g3195 325 SMART sant 18 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3195 Lja-Chr3 61666742 61668955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3195 1 135 MYB Transcription Factor Family AT2G26960 55.882 4.06e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja3g3195 Myb_DNA-binding 1.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3195 K09422 - vvi:100253438 216.468