Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3190 ATGTTTTCAAAGTGTCAGATCCTGCTTGCCTTTGCACTATGCTTGCAGTTTCACATGTCATCTCAGCTTCAAACCAAAGTAGAAATGCTTCCTGGTTTTCAAGGGCCTCTTCCCTTTCATCTAGAAACAGGGTATGTGGGATTGGGAGAAAGTGATGATGATGACATGCAAGTGTTCTACTACTTCATTAAGTCAGAGAACAACCCTCAAAAAGACCCTCTTATGCTTTGGCTAACTGGTGGTCCTGGTTGTTCTTCCTTTTCAGGCCTTGCCTTTCAGATAGGTCCACTTAAATTTGAAAGCAAGGAGTACGATGGGAGCGTGCCTAATTTGGTCTTGAGGTCACAGTCCTGGACAAAGGTATGTAGCATCATTTTTGTTGATTTGCCACTTGGAACTGGCTTCTCATACGCAAAAAATGTCACTACACAACGAAGCGACTGGAAATTAGTTCACCATGCCCATCAATTTCTCAGGAAGTGGCTGACTGATCACCCGGAATTTTTTTCAAATGAATTTTACATGGGGGGCGATTCATACTCTGGCATTCCTGCCCCTGCTATTGTTCAAGAAATTTCAAATGGAAATGAAAAAGGTCTCCAACCATGGATAAATCTCCAGGGATATTTGCTTGGGAACCCTTTGACAACACATAGAGAAAGAAATTATCAAATCCCATTTGCTCATGGAATGGGGCTTATTTCTGATGAACTCTATGAGTCAATGCAGAAAAACTGTAAAGGGGATTATGTATTTATAGATTCCAAAAACGAAATGTGTTTAAGAGATGTCAAGTACTTTGATGAGTGTCTTTCAGGAATTAATATGTTTGATATTCTGGATAGAAAATGTGAAGATGATTCACGTCGGAGATCTCTGACGCAGAGTTTGGACTTGGAGGCCTCTCTTAGTTCTCGTCTTACACGGCCAGAATTAAGCTGCCAAACCTATAGTTTTTTCCTCGCCACTAAATGGGCTAATGATGAGAGTGTTCGCAAGGCGTTGCATATTCGAGAGGGAACTATAGGGAAATGGACCCGTTGTTACACTACTGATTTTAAGAATGATATCTCTGGTAGCTTTGAGTTTCATGTAAATCTCAGTGCTAAAGGTTACCGTTCCTTGATATACAGTGGGGATCATGATGCAAAAGTTCCTTTCATGTCTACTCAAGCGTGGATAAGGGCTCTAAACTACTCCATTGTGGACGATTGGAGGTCGTGGCTTGTTAATGGCCAAGTTGCAGGATACACGAGGTCTTACTCGAATCGAATGACATTTGCAACTGTGAAGGGTGCAGGACATACTGCTCCTGAGTACAAGCCTGATGAAGGTTTTTCCATGTTCACTAGGTGGTTATCTAATATGCCTTTGTAA 1377 0.4161 MFSKCQILLAFALCLQFHMSSQLQTKVEMLPGFQGPLPFHLETGYVGLGESDDDDMQVFYYFIKSENNPQKDPLMLWLTGGPGCSSFSGLAFQIGPLKFESKEYDGSVPNLVLRSQSWTKVCSIIFVDLPLGTGFSYAKNVTTQRSDWKLVHHAHQFLRKWLTDHPEFFSNEFYMGGDSYSGIPAPAIVQEISNGNEKGLQPWINLQGYLLGNPLTTHRERNYQIPFAHGMGLISDELYESMQKNCKGDYVFIDSKNEMCLRDVKYFDECLSGINMFDILDRKCEDDSRRRSLTQSLDLEASLSSRLTRPELSCQTYSFFLATKWANDESVRKALHIREGTIGKWTRCYTTDFKNDISGSFEFHVNLSAKGYRSLIYSGDHDAKVPFMSTQAWIRALNYSIVDDWRSWLVNGQVAGYTRSYSNRMTFATVKGAGHTAPEYKPDEGFSMFTRWLSNMPL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3190 458 Gene3D alpha/beta hydrolase 19 294 IPR029058 -
Lja3g3190 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Lja3g3190 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Lja3g3190 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Lja3g3190 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Lja3g3190 458 SUPERFAMILY alpha/beta-Hydrolases 29 457 IPR029058 -
Lja3g3190 458 Pfam Serine carboxypeptidase 31 455 IPR001563 GO:0004185|GO:0006508
Lja3g3190 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 457 IPR001563 GO:0004185|GO:0006508
Lja3g3190 458 PANTHER PEPTIDASE S10, SERINE CARBOXYPEPTIDASE, ALPHA/BETA HYDROLASE-RELATED 10 457 - -
Lja3g3190 458 Gene3D - 314 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3190 Lja-Chr3 61599629 61604479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3190 27 58 Calmodulin-binding Proteins AT2G22960 56.250 8.33e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3190 K16296 - gmx:100780069 754.207